BAC Information

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BAC

Clone NameMSMg01-382G14
Chromosome4 (Build37)
Map Location 36,505,971 - 36,506,193
singlet/doubletsinglet
Overlap genenone
Upstream geneLingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382G14.T7 (MSMg01no382_g14.b1)MSMg01-382G14.TJ (MSMg01no382_g14.g1)
ACCAG486321AG486322
length756772
length of high quality
(start - end)
585 (32 - 616)231 (76 - 306)
definitionCHROMAT_FILE: MSMg01no382_g14.b1 PHD_FILE: MSMg01no382_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:09 2005CHROMAT_FILE: MSMg01no382_g14.g1 PHD_FILE: MSMg01no382_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCAATAGGT
ACCTTGTTTGTTCCATAAATGGTGTTGGGGCACAAGGATTCCTTCCATTC
ATGCATAGTCATGACATGGGACTTCACCTTACACCATGTTAACACCAATG
AGAAGTAGTAAAGGAACTAAATGCAGGAACAGGAACAGAAAATTCCTGGA
ATGTAAAAAAGGAAACATTGTCCTGGACAATTGGTTTTTTGTTTGTTTGT
TTTGTTTGAATTTGTCCCAAACATCACAGGCAACAATAGCAAAAGTAGAC
AAATAAAATTGTATCAAAATAAGGTGCTACATAATGCAGAAGCTAAAAAC
TGCATTAGAAAATTAACTGACCAGCAAGAAGACAAACACCTTCATAAAAA
AACTGAAAAACAAATAAATAAATAAATAAATAAAAACCACACAACTAGTC
CAAGAATGGATACAGATTGACATTTCTCCAAAGAAGTCATGAGGATAGTC
AACAAACATGTAAAAAATGCTAAACATCCTTCATTGGAGGGAAATGAAGA
ATACAGCCATAGCAAGATATCTTGTCAGCATACTTGTTAGCAAAATGCAG
GAGAAAAGTTGTGTAGGTGAAGATATGCAGCAAGAGAATCCTGAGCCCAC
TGCCAGTGATAATGCAAGACATCATAGCCACTATAAAACAGTCTGTGCAG
ATTCCCCTAATGCAAAATTTAATCACTATGTAACCACATTCCTCAGTATT
TTAGCG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAGTTTCTATAATTCTGAAACAGT
GAGTTGAGCCAAATCTGGTAGTATATACCCAGCAATGGGGAAGCTGAGGC
TGAAAGATCATGAATACAAAATCTGGTATAAAGTGACATTCAGTTCCCCC
AAAACTTGAATTCAGACTGAGCTATAAAGTGACACCCAGTTCTCCAAACA
GTCAAACAACATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGT
GTGTGCGTAAATGTGTTTATGTTTCTTTTGAGAAGATGAGGAAAAGAGAA
CAGGCACGGAGAACACTTCCCAATACCGTATAATAGGGTATCTAACTTGT
TGATAATTTTGGCAGATATCCTTCTTATGAATGTGATATGATTGATACTA
AAATACTTATGGATTTTAAATAGATGAAAAACATCCCTGACTTTGTATAT
GTCACGACTTCCAATCCTTGCGGAGTATTCCATGTGTTATGCTCAACTAC
TTTAAAGTATAGACGTAGCCAGATTCATGTAGGTTCTCTTTATTTATTTT
TTGCTTGTCTTCTAAACCGAAAATTCTTAATACCGATGCTCTCTTTTGGT
CCCGATAGAATAATATGTATTTGCTTGATTTATTTTTTGTTTCTAATAAA
TCGTAATATTTTTTTACTTCTTTCTTCTACGTACTACTTATGGGAATATT
CTTTTTTTATTTTTAAGTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_g14.g1 MSMg01no382_g14.g1 CHROMAT_FILE:
MSMg01no382_g14.g1 PHD_FILE: MSMg01no382_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:09 2005
         (231 letters)



>mm_chr4_36505771_36506401
          Length = 631

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtttctataattctgaaacagtgagttgagccaaatctggtagtatatacccagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtttctataattctgaaacagtgagttgagccaaatctggtagtatatacccagcaa 260

                                                                       
Query: 61  tggggaagctgaggctgaaagatcatgaatacaaaatctggtataaagtgacattcagtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tggggaagctgaggctgaaagatcatgaatacaaaatctggtataaagtggcattcagtt 320

                                                                       
Query: 121 cccccaaaacttgaattcagactgagctataaagtgacacccagttctccaaacagtcaa 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 cccccaaaacttgaattcagactgagctatgaagtgacacccagttctccaaacagtcaa 380

                                                      
Query: 181 acaacatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgt 223
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 acaacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)