BAC Information

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BAC

Clone NameMSMg01-382M17
Chromosome4 (Build37)
Map Location 116,371,112 - 116,371,539
singlet/doubletsinglet
Overlap genePrdx1
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4
Downstream geneMmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382M17.T7 (MSMg01no382_m17.b1)MSMg01-382M17.TJ (MSMg01no382_m17.g1)
ACCAG486615AG486616
length722744
length of high quality
(start - end)		624 (38 - 661)420 (66 - 485)
definitionCHROMAT_FILE: MSMg01no382_m17.b1 PHD_FILE: MSMg01no382_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:38 2005CHROMAT_FILE: MSMg01no382_m17.g1 PHD_FILE: MSMg01no382_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAG
CCAAGTGCGACCTATCTTGGCCAAATTCCAGGCTAGACTGGATGATAAGA
CTCTGTCCCTCAACTCCCCCCCAAAACCCAAAGCAGTTAGAGAAGATAGC
CCACATCTGACGGGGTGCAACTGCCTGGCACTCAACACCTTCTACATGCA
TAATTCTAAAAATAAACTTTAAAAGTCTGATCCTGGGGAGGAAAAAAAAA
ATCTGATCTTGAGTTGGATCAACTTTGAAATCTGCCACTCAGGATTTTGG
TATAGCTAACAATGTTTAATTACACCTCACTACAGCCTGTGATATTTATC
TCTTATTTTCCTGAACCAATTGTTATCTCCAAGGCTTGCTTTACTGCCTC
TGTCTGCTAACCTAGGCCTAGTCCTGAAGACGTCTAGCCTCTGTACAATC
TTATCTAGGCCTACTATGTTTTCAGCTTGAGGCTTTCTGATCTCTAACTG
GCTATTCTACTCAGCTCATCTGGCTCAAACTCCTCTCTAGGATAACTAAT
TCAATCTCCTTTCCCTCTCCGCCTCTCTTGAACTGCTCTGCTTAGTTTCA
TACTAACATTGGCAAACTCTTCTAATCTATACTATGCCTATAATAACCTG
TCTAAAATATACATGACCAGCCACTAAAATTTGTAAATGTGTAAGTATTT
ATACAATTTTATACAATTCCGT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGAATTTGGGTTTCTTTTAAAAAACACAGAAGTA
GGGGCTGGAGGAGATGAACAATGGTTAAAAGCACTGACTGCTCTTCCAGA
GGTCCTGAGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCTGT
AATGGGAATCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCAACAGTGT
ACAGTGTACTTATAGACATAAAATAAATGAATAATTCTTTTTTTTTAATT
CATAAAAATAATGTAAGAATGTGTTTTCATTTTAATCCCAGGTGTGGGAT
GTGGGCTGCTTTGATTTGCCTTGTGCTTTAGCAGAGGCGTGGTTTTGCCA
GCACAGATAGTTTCCTTGGCTTTATAACATTTGTAATTCTGGGAACCTTT
CAGAGGGTATAAAAATACTAGAGCCCTGATGGGGGGTTTGGTGGNTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNTNTNNNNNNNNNNNNNTNNNNNNTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTNTTTTNNTTTTT
NNTTTTTTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTNTNTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_m17.b1 MSMg01no382_m17.b1 CHROMAT_FILE:
MSMg01no382_m17.b1 PHD_FILE: MSMg01no382_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:38 2005
         (624 letters)



>mm_chr4_116371112_116372142
          Length = 1031

 Score =  656 bits (339), Expect = 0.0
 Identities = 408/441 (92%), Gaps = 21/441 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagccaagtgcgacctatcttggccaaattc--caggctagactggatgataag 62
           |||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 428 gaattctagccaagtgagacctatcttggccaaattccacaggctagactggatgataag 369

                                                                       
Query: 63  actctgtccctcaactcccccccaaaacccaaagcagttagagaagatagcccacatctg 122
           ||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||||
Sbjct: 368 actctgtccctcaactccccccccaaacccaaagcagctggagaagacagcccacatctg 309

                                                                       
Query: 123 acggggtgcaactgcctggcactcaacaccttctacatgcataattctaaaaataaac-- 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 308 acggtgtgcaactgcctggcactcaacaccttctacatgcataattctaaaaataaactt 249

                                                                       
Query: 181 ---tttaaaagtctgatcctggggaggaa-aaaaaaaatctgatcttgagttggatcaac 236
              ||||||||||||||||||||  |||| ||||||||    ||||       |||||||
Sbjct: 248 taatttaaaagtctgatcctggg--ggaagaaaaaaaa----atct-------gatcaac 202

                                                                       
Query: 237 tttgaaatctgccactcaggattttggtatagctaacaatgtttaattacacctcactac 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaatctgccactcaggattttggtatagctaacaatgtttaattacacctcactac 142

                                                                       
Query: 297 agcctgtgatatttatctcttattttcctgaaccaattgttatctccaaggcttgcttta 356
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 141 agcctatgatatttatcttttattttcctgaaccaattgttatctccaaggcttgctttg 82

                                                                       
Query: 357 ctgcctctgtctgctaacctaggcctagtcctgaagacgtctagcctctgtacaatctta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ctgcctctgtctgctaacctaggcctagtcctgaagacgtctagcctctgtacaatctta 22

                                
Query: 417 tctaggcctactatgttttca 437
            |||||||||  |||||||||
Sbjct: 21  cctaggcctagaatgttttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1031
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1021
Effective search space:   626894
Effective search space used:   626894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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