BAC Information

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BAC

Clone NameMSMg01-382N11
Chromosome4 (Build37)
Map Location 105,558,244 - 105,720,625
singlet/doubletdoublet
Overlap genenone
Upstream gene1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1
Downstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382N11.T7 (MSMg01no382_n11.b1)MSMg01-382N11.TJ (MSMg01no382_n11.g1)
ACCAG486650AG486651
length732736
length of high quality
(start - end)		563 (57 - 619)520 (63 - 582)
definitionCHROMAT_FILE: MSMg01no382_n11.b1 PHD_FILE: MSMg01no382_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:42 2005CHROMAT_FILE: MSMg01no382_n11.g1 PHD_FILE: MSMg01no382_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,558,244 - 105,558,806)(105,720,108 - 105,720,625)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCACG
TTACAAGTTAACGTCAAAGGTCCTTGGAGAAAGGCCATGTGGATGGTTTA
TATAGGCAAACTTGAACATCAAAAGTGATGCACAAAACTGAGATAGGAAT
ACAGCAGACATTGGCATCCAGATGAATAGATGAGTGAGCCCAGGGAAGTA
GAGATGGTGAGTAAGGGAAATAAGGTCAATATTTAAGATTCAGGTCAAAG
ATAAGTATCCAACAAAGAAGGATCCAGAAGGGCAACAGGAAAGAGAACAG
AGAACCGGGTATTTGTGACAGTTGAAATGAGGGAAAGTCAAGACAGGAGG
CTGGGAGTCAAGAGATGAGTTCTATGCTAAGACCGGTACAATGAGAACCT
GAAGATATTTAGTGGATTTAGCATCATGCATGAGTCTAGCAGACTATACT
AAGAGTTACTTTGGTGGAACTGTGAGGTTGATCCAAGTGGTCGTGTGTTG
GAAGGGATTCGAAAGGAAAGAAGTAGAGAAAGAGCAGAGACCATGATTTG
AAAAAACAGTCTAGCTGCTAAGGTAAGGAAGGAAAACTACCAACATGGAG
AAGAATGAGAGACCCTGAGTCCTTCATGAGCTAGAAGACACAGGGGCATG
CTTGATTGTTCATAAAAGCAGTCCAATACACAGGGACCAAGGGTAGATGG
GGAGTGGTGGTGTAAAGNAACGATTTTCACCA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGTATGCCTGTTTCCTTCAAGCAGGAAACCTGGGAGAT
TATGAAGGTCTCCACTTCGTTTGACTGTCACTTTAACTCTTCCAAAGGTA
TGGGGTCATTTTCTCCACACACTGAACCCTGTGAAAGCAGGAGCTGCACC
TCAGTGATCGACAAATCACTTCCTAACCTCGCACAGTGCCCAGTGCAGGG
CACCTTTCCCACGATGCCTCTGCTATGCCTTCCTCTTGCTATGATTTGCA
TGTTGAATGTTCTCTAAAGTCTCAGAGTGGCACTATGGAAGGTGGTGGGA
CCTCTGAGACCTCTAAGGTCACTGTGGTATGCCACCAAAGGAGGCATGCC
AGCTATTTATTCTTATTTTTCTGCTTCCCGGTTTGTGATATAAGCATTTT
TGGTCTATCCCATGCTTCCCACCAGTGCTGTCTGGCGCAAGCCAACAGAA
GGCCAAAGCATCAGATCTGTTCAGTGATGGGCTGCAATCTCCAAAATCAT
GAGTTTTTAAAATCAGGGTTTTTTCTTTATAAGTTAGTTATCCCAGGTAT
TTTGTTATAATGGGAATCTGATTAACACCCTACCCTACATACTGGGTTTC
CTGATGTCCTTGGACTAAATATAAATTACCCCTGTTTAAATTCCCTATTC
CATAATGGTTCTCGGAACTTTTCAGGAAGGGGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_n11.b1 MSMg01no382_n11.b1 CHROMAT_FILE:
MSMg01no382_n11.b1 PHD_FILE: MSMg01no382_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:42 2005
         (563 letters)



>mm_chr4_105558044_105559006
          Length = 963

 Score = 1050 bits (543), Expect = 0.0
 Identities = 558/563 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaacgtcaaaggtccttggagaaaggccatgtggatggtttatataggcaaacttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaacgtcaaaggtccttggagaaaggccatgtggatggtttatataggcaaacttgaa 260

                                                                       
Query: 61  catcaaaagtgatgcacaaaactgagataggaatacagcagacattggcatccagatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcaaaagtgatgcacaaaactgagataggaatacagcagacattggcatccagatgaa 320

                                                                       
Query: 121 tagatgagtgagcccagggaagtagagatggtgagtaagggaaataaggtcaatatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatgagtgagcccagggaagtagagatggtgagtaagggaaataaggtcaatatttaa 380

                                                                       
Query: 181 gattcaggtcaaagataagtatccaacaaagaaggatccagaagggcaacaggaaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattcaggtcaaagataagtatccaacaaagaaggatccagaagggcaacaggaaagaga 440

                                                                       
Query: 241 acagagaaccgggtatttgtgacagttgaaatgagggaaagtcaagacaggaggctggga 300
           ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagaactgggtaaatgtgacagttgaaatgagggaaagtcaagacaggaggctggga 500

                                                                       
Query: 301 gtcaagagatgagttctatgctaagaccggtacaatgagaacctgaagatatttagtgga 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 gtcaagagatgagttctatgctaagaccggtacaatgagaacctgaagatatttggtgga 560

                                                                       
Query: 361 tttagcatcatgcatgagtctagcagactatactaagagttactttggtggaactgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagcatcatgcatgagtctagcagactatactaagagttactttggtggaactgtgag 620

                                                                       
Query: 421 gttgatccaagtggtcgtgtgttggaagggattcgaaaggaaagaagtagagaaagagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgatccaagtggtcgtgtgttggaagggattcgaaaggaaagaagtagagaaagagca 680

                                                                       
Query: 481 gagaccatgatttgaaaaaacagtctagctgctaaggtaaggaaggaaaactaccaacat 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagaccatgatttgaaaaaactgtctagctgctaaggtaaggaaggaaaactaccaacat 740

                                  
Query: 541 ggagaagaatgagagaccctgag 563
           |||||||||||||||||||||||
Sbjct: 741 ggagaagaatgagagaccctgag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_n11.g1 MSMg01no382_n11.g1 CHROMAT_FILE:
MSMg01no382_n11.g1 PHD_FILE: MSMg01no382_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:42 2005
         (520 letters)



>mm_chr4_105719908_105720825
          Length = 918

 Score =  907 bits (469), Expect = 0.0
 Identities = 507/523 (96%), Gaps = 8/523 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgcctgtttccttcaagcaggaaacctgggagattatgaaggtctccacttcgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agtatgcctgtttccttcaagcaggaaacctgggagattatgaaggtctccacttcgttt 659

                                                                       
Query: 61  gactgtcactttaactcttccaaaggtatggggtcattttctccacacactgaaccctgt 120
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 gactgtcagtttaactcttccaaaagtatggggtcattttctccacacactgaaccctgt 599

                                                                       
Query: 121 gaaagcaggagctgcacctcagtgatcgacaaatcacttcctaacctcgcacagtgccca 180
           |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 598 gaaagcaggagctgcacctcagtgattgacaaatgacttcctaacctcgcacagtgccca 539

                                                                       
Query: 181 gtgcagggcacctttcccacgatgcctctgctatgccttcctcttgctatgatttgcatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcgcagggcacctttcccacgatgcctctgctatgccttcctcttgctatgatttgcatg 479

                                                                       
Query: 241 ttgaatgttctctaaagtctcagagtggcactatggaaggtggtgggacctctgagacct 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttgtatgttctctaaagtctcagagtggcactatggaaggtggtgggacctctgagacct 419

                                                                       
Query: 301 ctaaggtcactgtggtatgccaccaaaggaggcatgccagctatttattcttatttttct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 418 ctaaggtcactgtggtatgccaccaaaggaggcatgccagctatttattcttatt---ct 362

                                                                       
Query: 361 gcttcccggtttgtgatataagcatttttggtctatcccatgcttcccaccagtgctgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcttcccggtttgtgatataagcatttttggtctatcccatgcttcccaccagtgctgtc 302

                                                                       
Query: 421 tggcgcaagccaacagaaggccaaagcatcagatctgttcagtgatgggctgcaatctcc 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggcgcaagcctacagaaggccaaagcatcagatctgttcagtgatgggctgcaatctcc 242

                                                      
Query: 481 aaaatcatgagtttttaaaatcagggtttttt---ctttataa 520
           |||| |||||||||||||||||||  ||||||   ||||||||
Sbjct: 241 aaaaccatgagtttttaaaatcag--tttttttttctttataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space:   463080
Effective search space used:   463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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