BAC Information

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BAC

Clone NameMSMg01-383G24
Chromosome4 (Build37)
Map Location 96,708,230 - 96,708,616
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383G24.T7 (MSMg01no383_g24.b1)MSMg01-383G24.TJ (MSMg01no383_g24.g1)
ACCAG487107AG487108
length788772
length of high quality
(start - end)		418 (45 - 462)387 (75 - 461)
definitionCHROMAT_FILE: MSMg01no383_g24.b1 PHD_FILE: MSMg01no383_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:29 2005CHROMAT_FILE: MSMg01no383_g24.g1 PHD_FILE: MSMg01no383_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAAAGTCTTTAATTTCTTCCTTGACCAAGTTATCATTGAGTAGA
ATGTTGGTCAGCCTCCATGTGTATGTGGGATTTCTATTGTTTTTGTTGTT
ATTGAAGATTAGTCTTTGTTATCTGATAGAATGCACAGGATTATGTCAAT
CTTCTTGTACCTCTTGAGGCCTGTTTTGTGACTGATTATATGGTCAATTT
TGGGGAAGGTATCATGAGATGCTGAGAAGAATGTATATTCTTTTGATTTA
GGAAAAAATGTTCTATAGATATCTGTCAAATCCATTTGGTTCATAACTTT
TGTTAGTTTCACTGTGTCTCTGTTTATGTTCTGTTCCATGATCTTTCCAT
TGATGAGAGTGGGGTATTGAAGTCTCTCACTATTATTGTGTGGGTGCAAT
GTCTGCTTTGATCTTTAGTAAAGTTTCTTTTATGAATATGAGTGCCCTTT
GCTTTGGAAGATATATGTTCCTAATTAAAAAGTCTTTTCGATAGATTTTT
TCCTTTGTTACTATTGGGGGTCCTCTTCTTATTTTTTTTTGATACCTTAT
TGTGTAAAGCCATTTTTTTTTTTATTGTAAATATCTTACTTCTCCTTGTG
TCTTTTGCTATTTATCTCCTTTTTACACTTCCTCCTATTTTTTCTTTTCT
ATTTTCCTTGCGTTTAATTTTTTTGTTTCTCTCTTACCTGGTGCTTCTCC
TTTTTTATTTTCCTTCTCCTTTCCATATTTTTTTCTGC

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAGTAAAAGTCACTAAGCAGAGA
AGTAAAGATAAGATAGTTATTCAAAGATTTTATCAATTATATCAGGATCA
TGTTTGAGTGATTTGAGGCTAGAAAGAGGTGGGTGAAAACAGATAAAGAT
ACACGTTCATACACATCTCTGTATATATACAGATGAGCATATGAAGCTTG
AGTTATAAGAAACAAGTTTTTGGGCAGTGGTGATTGGTGTTTCTCTTCTT
ACAGTACTGTAGAAAATCTTTTGATCAAGATAAAGTAATCCAGATTCTTA
CATTACTTTCCCCATTGTAGTGACCAAAATATTTGATAAGAAGCATTTTG
ACTTCAGAAGAGCTTATTTAGGCAAGGAACTCACAGTTTGAGGGTACAAT
TCGTTATGGTGGGGTAATTTAAGAAATAACATTGAATGTTTTAGATACCA
TCTTGAAGTGTACTAAAGGGAACATGAACAAATATGTAGGAAGCAATCTG
ACCATAATTTTCCCCATTAATTGGGGAAATATGTGAAACATTTTTCCTTA
ATTTCCCCATGTGGCGAAAGGTTATAATTTTGCTCCCCACCTACACGGGG
TAATTTGAAAAAACCGGGTAAAGGGTTGGCTTAACCTTTTTGTGGGTGCG
TTAATAACTTCGACAAAAATACTTTTTTTTTTGGCGGGAGGTTTTTTGTC
TTCCGTCTTAGGTTTTTATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_g24.g1 MSMg01no383_g24.g1 CHROMAT_FILE:
MSMg01no383_g24.g1 PHD_FILE: MSMg01no383_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:29 2005
         (387 letters)



>mm_chr4_96708030_96708816
          Length = 787

 Score =  748 bits (387), Expect = 0.0
 Identities = 387/387 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaagtaaaagtcactaagcagagaagtaaagataagatagttattcaaagattttatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaagtaaaagtcactaagcagagaagtaaagataagatagttattcaaagattttatc 260

                                                                       
Query: 61  aattatatcaggatcatgtttgagtgatttgaggctagaaagaggtgggtgaaaacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattatatcaggatcatgtttgagtgatttgaggctagaaagaggtgggtgaaaacagat 320

                                                                       
Query: 121 aaagatacacgttcatacacatctctgtatatatacagatgagcatatgaagcttgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagatacacgttcatacacatctctgtatatatacagatgagcatatgaagcttgagtt 380

                                                                       
Query: 181 ataagaaacaagtttttgggcagtggtgattggtgtttctcttcttacagtactgtagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagaaacaagtttttgggcagtggtgattggtgtttctcttcttacagtactgtagaa 440

                                                                       
Query: 241 aatcttttgatcaagataaagtaatccagattcttacattactttccccattgtagtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcttttgatcaagataaagtaatccagattcttacattactttccccattgtagtgac 500

                                                                       
Query: 301 caaaatatttgataagaagcattttgacttcagaagagcttatttaggcaaggaactcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaatatttgataagaagcattttgacttcagaagagcttatttaggcaaggaactcac 560

                                      
Query: 361 agtttgagggtacaattcgttatggtg 387
           |||||||||||||||||||||||||||
Sbjct: 561 agtttgagggtacaattcgttatggtg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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