BAC Information

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BAC

Clone NameMSMg01-383K21
Chromosome4 (Build37)
Map Location 119,453,613 - 119,621,914
singlet/doubletdoublet
Overlap geneHivep3
Upstream geneOlfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b
Downstream geneEdn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383K21.T7 (MSMg01no383_k21.b1)MSMg01-383K21.TJ (MSMg01no383_k21.g1)
ACCAG487293AG487294
length750777
length of high quality
(start - end)		386 (36 - 421)437 (70 - 506)
definitionCHROMAT_FILE: MSMg01no383_k21.b1 PHD_FILE: MSMg01no383_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:47 2005CHROMAT_FILE: MSMg01no383_k21.g1 PHD_FILE: MSMg01no383_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,453,613 - 119,453,883)(119,621,478 - 119,621,914)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGG
CCTTGACATAACTTTCTGAGTTTGGTACGAGTTGTTCCTCCTCTGGCCTA
AGAATGGCCTGCCCTTGGATGAGTGCCGACTGGGTGTGCTTCCTTCCACA
CGAAGCCCACAGCAGGGTCCTTGATCTCCAAGCATGGCCTTGCTGGTCCA
TCAGCTTGCAGATGGATCTGATTTCATTCAGCAGCGGATCTCTCCATGGC
CATTGACCAGTGTAGATCTTACATGTGCTACAAGTACTACGGTGATCTGA
ATGAAAATGTCCGCCAGAGGTTCATGTGTTGGAGCACTTGGGGCCCAGCT
GGGGGTACTGTGTGGGGAGGTAGCACAGCTCTGCTGGAAGAAGTATGTAA
CCGGGGGTGGGGGGTGAGGTGTNNTTTTNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTNNTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTNNTTTTTTTTNTTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTNTTTTTNTTTNTTTTTTTGTTTTTTTTTTTT
TTTNNTTTTTTCGTTTTTTTTTTTTTTTTTTTTNNTTTTTTTNNTTNNTT
TTTNTTNTTTTTTTTTTNTTTTTTTTTTTTTTNTTTTTTNTNNTTTTTTN


TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCTTCCGAGAACTGGAAAACCGTGAACA
AGCAGCTTGGTGTATTTTAATGAATGTCCTTCCCCAGCCCCACCAGCTCG
TTCCTTTTTTGGTTTTCTCATCTCCCTAGCTATTTATAAAGCCCTGAACC
CTCTGTTTAGAATTTGGTTCCTGGCTCACTCTTGAATTTGCCTGTCAGAG
ATCTCCATGGAGAGGGAGGTCCTGTTATCTACCCGGGTTCATCCCGGGTT
CATAAGATGTTGCATAATCCTGCCATGTCCTGAAGCGGCAGAGTGGAAAC
GGAAGGACCCAGGTGCCTGTCAACACCTGCTTGGCTGCCGCTCGGTCGAG
TGTCTCTGAGCAGCTCTCAGAGCCTTGGAGTGGGAAGAGCAATGTTTACC
CACACATCCTTCCCTGGGATGTTAGAGTTTGCTTCAGCTCATGTCTGGGT
TTCCAGTGCTCTCCTGATGAGCGTACGGGAAGAAGCAAGCAGAAAATAAA
CCTGTGACCCTCTGTCTCCATGGGGCCACCCCTCCTACAAGGGGCAACCT
TCTCAGCGTCTTCCCGGTTTCCCACCGGGGGGGAGTGGTTCCATAACCAC
CTTCTTTTTTCCCAGGGGGGCGGGCCCCCTCCCCTTAAAAAGAAAAGGGT
GTTAAGGAATGAGGTGATTATATCTTGTTTCCGGGGGTTTTTTAGCTTCT
TGTAAATTTTCTTTGTGTATTTATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_k21.b1 MSMg01no383_k21.b1 CHROMAT_FILE:
MSMg01no383_k21.b1 PHD_FILE: MSMg01no383_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:47 2005
         (386 letters)



>mm_chr4_119453409_119454194
          Length = 786

 Score =  501 bits (259), Expect = e-146
 Identities = 268/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggccttgacataactttctgagtttggtacgagttgttcctcctctggcct 64
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagccttgaaataactttctgagtttggtacgagttgttcctcctctggcct 264

                                                                       
Query: 65  aagaatggcctgcccttggatgagtgccgactgggtgtgcttccttccacacgaagccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaatggcctgcccttggatgagtgccgactgggtgtgcttccttccacacgaagccca 324

                                                                       
Query: 125 cagcagggtccttgatctccaagcatggccttgctggtccatcagcttgcagatggatct 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcagggtccttgatctccaagcatggccttgctggtccatcagcttgcagatggatct 384

                                                                       
Query: 185 gatttcattcagcagcggatctctccatggccattgaccagtgtagatcttacatgtgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatttcattcagcagcggatctctccatggccattgaccagtgtagatcttacatgtgct 444

                                          
Query: 245 acaagtactacggtgatctgaatgaaaatgt 275
           |||||||||||||||||||||||||||||||
Sbjct: 445 acaagtactacggtgatctgaatgaaaatgt 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_k21.g1 MSMg01no383_k21.g1 CHROMAT_FILE:
MSMg01no383_k21.g1 PHD_FILE: MSMg01no383_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:47 2005
         (437 letters)



>mm_chr4_119621278_119622114
          Length = 837

 Score =  799 bits (413), Expect = 0.0
 Identities = 431/437 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcttccgagaactggaaaaccgtgaacaagcagcttggtgtattttaatgaatgtcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caggcttctgagaactggaaaaccgtgaacaagcagcttggtgtattttaatgaatgtcc 578

                                                                       
Query: 61  ttccccagccccaccagctcgttccttttttggttttctcatctccctagctatttataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttccccagccccaccagctcgttccttttttggttttctcatctccctagctatttataa 518

                                                                       
Query: 121 agccctgaaccctctgtttagaatttggttcctggctcactcttgaatttgcctgtcaga 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agccctgaaccctctgtttaggatttggttcctggctcactcttgaatttgcctgtcaga 458

                                                                       
Query: 181 gatctccatggagagggaggtcctgttatctacccgggttcatcccgggttcataagatg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 457 gatctccatggagagggaggtcctgttatctaccctggttcatcccgggttcataagatg 398

                                                                       
Query: 241 ttgcataatcctgccatgtcctgaagcggcagagtggaaacggaaggacccaggtgcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgcataatcctgccatgtcctgaagcggcagagtggaaacggaaggacccaggtgcctg 338

                                                                       
Query: 301 tcaacacctgcttggctgccgctcggtcgagtgtctctgagcagctctcagagccttgga 360
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 337 tcaacacctgcttggctgccgctcggttgagtgtctctgagcagctctcagagcctcgga 278

                                                                       
Query: 361 gtgggaagagcaatgtttacccacacatccttccctgggatgttagagtttgcttcagct 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 277 gtgggaagagcaatgtttacccacacatccttctctgggatgttagagtttgcttcagct 218

                            
Query: 421 catgtctgggtttccag 437
           |||||||||||||||||
Sbjct: 217 catgtctgggtttccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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