BAC Information

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BAC

Clone NameMSMg01-383P17
Chromosome4 (Build37)
Map Location 14,139,406 - 14,308,591
singlet/doubletdoublet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383P17.T7 (MSMg01no383_p17.b1)MSMg01-383P17.TJ (MSMg01no383_p17.g1)
ACCAG487525AG487526
length761744
length of high quality
(start - end)		519 (65 - 583)321 (321 - 641)
definitionCHROMAT_FILE: MSMg01no383_p17.b1 PHD_FILE: MSMg01no383_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:10 2005CHROMAT_FILE: MSMg01no383_p17.g1 PHD_FILE: MSMg01no383_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,139,406 - 14,139,922)(14,308,271 - 14,308,591)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGACCTATATTCATGTGCTTAAAACAGCTGCTTGGCCTTGAACTGTC
ACTGTGCTCTGGGTCCCTCTTACTGTGTCTTTGCTCTGGGACCCTCTTGC
TGTGCCCCTCTGTGCTGGGCTGTGTTTCTAGAAGTGCCAGCATCTAGATA
ATCACAGGTCAGCCTGTGCAATGTGACCTGTGCCAGACAGCAATGAATTC
GTGAGAAGTAATAGGTAATTTGACCTAATTTGGCTTGAGCCTCTCCTGGG
CTGAGATGAGATTACCGACTGAATACAATTATACATGATCATTTGGTGCT
TTTGACCTACAGGCAGCTAGGGACTCAAGTTGGATCATCTCACCTATGAA
ATTTCCCCAAGGGTTTCTAGATAATGACTTTAAATGCTAATTACAACATG
TAGTCAATGCTCTGATAAAATTGAGAGCATTTTGATTTATGATGGATATT
AAGTAAGAGCAGGAATAAAACCCAGTGTATTTAAAGGGTTTAAATGCACT
CTGAAGGTTTGAACATGAAAAGAAAACTGCACAGCACTTTTTTTTTCTTT
AGNAATTATGGTGCTTTAACCTAGAAATAATGTCCCCCTTATTACTGCCA
AAGTTGCTACTGGAGGAATTGACCTAATTATTGTCCACATTGGACACCCT
CAAAAAATTGCCCTTTCCCACTTGGGAACATTTTGTAGGAACACCCAGGG
GAGGGCTTGCT

AAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCAGAAAAACTTAAAATCATCTTTGAAGCCCCCAAGCCTACTA
GGCAAGTACACTTCTTTCCTCTTGGGACTTGACAAGCAATGCTCTGTTTC
TCATGGCTATGAAGTTGTCTATTGCCGAAATGGTTAGCATCCTAAACCCA
AGGCAAAGTATCTGAGGGAAAGTAACTTGTAATGAGGGAAGATCTATTTG
GTTCACAGTCTCCACATGGTTGCTTGTTCTTGTTGCTTTTATAGTAGCAT
ATGGAGAGGCTTAATCNTTGGAAGACAGTGAATGACTTAACTTTTCCTTG
ATTATTATTTGTGAGGAATTCATTTTTTATTTGTTCACCTTCAACTTATT
TGTGCCTTTGAAATGGCCACATTTTTCTTATAAATAGAACACAGTTGGAT
TATTTCTTTTCATCCAATTCTGCAAATCTCTTACTTTTAATTTGAACTCA
TAGATTTCCCTGTATTTATTTTGTTGTCTGTGAGATTTTGCAAGCATGCT
CTACCATGCCTGGCATTTTTTCATGGGTTCTGGTGATAAAAGTTGGGTAT
TCATGCTTGCAAGACATTTTAATGTCTGAGTTATCCATTCACTTCTTTAC
ATTGACATTTTAATTGGAAACAATTCAGCCCACATTATTACAAACTAATT
TGTTTCTATGAAGTTCTGGTTTCCCAATTCTACTTTTATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_p17.b1 MSMg01no383_p17.b1 CHROMAT_FILE:
MSMg01no383_p17.b1 PHD_FILE: MSMg01no383_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:10 2005
         (519 letters)



>mm_chr4_14139206_14140124
          Length = 919

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgggtccctcttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtgcttaaaacagctgcttggccttgaactgtcactgtgctctgggtccctcttact 260

                                                                       
Query: 61  gtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctgtgtttctagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctttgctctgggaccctcttgctgtgcccctctgtgctgggctgtgtttctagaag 320

                                                                       
Query: 121 tgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtgccagacagcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccagcatctagataatcacaggtcagcctgtgcaatgtgacctgtgccagacagcaat 380

                                                                       
Query: 181 gaattcgtgagaagtaataggtaatttgacctaatttggcttgagcctctcctgggctga 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcctgagaagtaataggtaatttgacctaatttggcttgagcctctcctgggctga 440

                                                                       
Query: 241 gatgagattaccgactgaatacaattatacatgatcatttggtgcttttgacctacaggc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgagattaccaactgaatacaattatacatgatcatttggtgcttttgacctacaggc 500

                                                                       
Query: 301 agctagggactcaagttggatcatctcacctatgaaatttccccaagggtttctagataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctagggactcaagttggatcatctcacctatgaaatttccccaagggtttctagataa 560

                                                                       
Query: 361 tgactttaaatgctaattacaacatgtagtcaatgctctgataaaattgagagcattttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgactttaaatgctaattacaacatgtagtcaatgctctgataaaattgagagcattttg 620

                                                                       
Query: 421 atttatgatggatattaagtaagagcaggaataaaacccagtgtatttaaagggtttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatgatggatattaagtaagagcaggaataaaacccagtgtatttaaagggtttaaa 680

                                                
Query: 481 tgcactctgaaggtttgaacatgaaaagaaaactgca 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcactctgaaggtttgaacatgaaaagaaaactgca 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no383_p17.g1 MSMg01no383_p17.g1 CHROMAT_FILE:
MSMg01no383_p17.g1 PHD_FILE: MSMg01no383_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:10 2005
         (321 letters)



>mm_chr4_14308175_14308895
          Length = 721

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagacagtgaatgacttaacttttccttgattattatttgtgaggaattcattttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaagacagtgaatgacttaacttttccttgattattatttgtgaggaattcattttttat 358

                                                                       
Query: 61  ttgttcaccttcaacttatttgtgcctttgaaatggccacatttttcttataaatagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttgttcaccttcaacttatttgtgcctttgaaatggccacatttttcttataaatagaac 298

                                                                       
Query: 121 acagttggattatttcttttcatccaattctgcaaatctcttacttttaatttgaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acagttggattatttcttttcatccaattctgcaaatctcttacttttaatttgaactca 238

                                                                       
Query: 181 tagatttccctgtatttattttgttgtctgtgagattttgcaagcatgctctaccatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tagatttccctgtatttattttgttgtctgtgagattttgcaagcatgctctaccatgcc 178

                                                                       
Query: 241 tggcattttttcatgggttctggtgataaaagttgggtattcatgcttgcaagacatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tggcattttttcatgggttctggtgataaaagttgggtattcatgcttgcaagacatttt 118

                                
Query: 301 aatgtctgagttatccattca 321
           |||||||||||||||||||||
Sbjct: 117 aatgtctgagttatccattca 97


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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