Query= MSMg01no384_b24.b1 MSMg01no384_b24.b1 CHROMAT_FILE:
MSMg01no384_b24.b1 PHD_FILE: MSMg01no384_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
(450 letters)
>mm_chr4_79810686_79811535
Length = 850
Score = 808 bits (418), Expect = 0.0
Identities = 436/446 (97%), Gaps = 7/446 (1%)
Strand = Plus / Plus
Query: 5 gaattcaattaaggccatcaggacaggcaatgtatgacaattcagttattacgggatacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattaaggccatcaggacaggcaatgtatgacaattcagttattacgggatacc 264
Query: 65 agatagagacttggttcatgtcaccatcaaaatttggtaaaatcgcgttgtctaaagttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatagagacttggttcatgtcaccatcaaaatttggtaaaatcgcgttgtctaaagttt 324
Query: 125 aggcaatataataatcaaagaggaagcctcagaggaatgtgataataaagcaatggcaag 184
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aggcaatataataatcaaggaggaagcctcagaggaatgtgataataaaacaatggcaag 384
Query: 185 tttgggtgtggtttaattaccttagcttggataatgtattttactaggaggacacatatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgggtgtggtttaattaccttagcttggataatgtattttactaggaggacacatatg 444
Query: 245 gtaagtaatgatagtttgcaagcacaaacagggcgaagtgatatctgtaattttagagcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaagtaatgatagtttgcaagcacaaacagggcgaagtgatatctgtaattttagagcc 504
Query: 305 ttacatattttagaaaatgaaaacgtacttcaaaaccaaataacagaagacaacaattaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttacatattttagaaaatgaaaacgtacttcaaaaccaaataacagaagacaacaattaa 564
Query: 365 gaagctattaagcaataaaggctaatttaaaatcagccatgtgttcaaaaataaaaaaga 424
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 565 gaagctattaagcaataaaggctaatttaaaatcaaccatgtgttcaaaaa-------ga 617
Query: 425 aacaagcaaataaaatcagccatgtg 450
||||||||||||||||||||||||||
Sbjct: 618 aacaagcaaataaaatcagccatgtg 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_b24.g1 MSMg01no384_b24.g1 CHROMAT_FILE:
MSMg01no384_b24.g1 PHD_FILE: MSMg01no384_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:21 2005
(403 letters)
>mm_chr4_79975186_79975987
Length = 802
Score = 764 bits (395), Expect = 0.0
Identities = 401/403 (99%), Gaps = 1/403 (0%)
Strand = Plus / Minus
Query: 1 caaaaagtaggaagcagtcacaaatggccaagggtagtttataattagcaatttgaaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caaaaagtaggaagcagtcacaaatggccaagggtagtttataattagcaatttgaaatc 543
Query: 61 attagccctattgtcttctttttctaaagagtgatgttcacataaatcagtcttagcctc 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 542 attagccctattgtcttctttttctaaagagtgat-ttcacataaatcagtcttagcctc 484
Query: 121 tgccaatttctaaaattcttatttccaaactaatcccattatcaaatgtgctgaagaatg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 tgccaatttctaaaattcttatttccaaactaatcccattatcatatgtgctgaagaatg 424
Query: 181 gctacatcaattcatatctcattttcatgaaaaaaggtacaggttttgtcaaaatattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gctacatcaattcatatctcattttcatgaaaaaaggtacaggttttgtcaaaatattta 364
Query: 241 ataggtatgacagcacaggtgtacctccattgttactcaaggctgttgtaattatcttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ataggtatgacagcacaggtgtacctccattgttactcaaggctgttgtaattatcttct 304
Query: 301 cagatagcatgcactcaatgaagattgcactttaactctcttagaatataatcaaacaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cagatagcatgcactcaatgaagattgcactttaactctcttagaatataatcaaacaca 244
Query: 361 ggtatataaatttacatatgaaaagatttcgaaaacaaggcag 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggtatataaatttacatatgaaaagatttcgaaaacaaggcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 802
Length adjustment: 9
Effective length of query: 394
Effective length of database: 793
Effective search space: 312442
Effective search space used: 312442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
