Query= MSMg01no384_d02.b1 MSMg01no384_d02.b1 CHROMAT_FILE:
MSMg01no384_d02.b1 PHD_FILE: MSMg01no384_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
(534 letters)
>mm_chr4_43981266_43982200
Length = 935
Score = 888 bits (459), Expect = 0.0
Identities = 495/509 (97%), Gaps = 8/509 (1%)
Strand = Plus / Plus
Query: 5 gaattctcaagcacagcccagagtccagtcgtggccagtgtggagagaaccttgcgtggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagcacagcccagagtccagtcgtggccagtgtggagagaaccttgcgtggg 264
Query: 65 cgtcctatgatcagacaggtaggacactctcagctcc---ccgctctgctctgctagatc 121
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 265 cgtcctatgatcagacaggtaggacactc--agctcctccccgctctgctctgctagatc 322
Query: 122 taagatgaggcctctgggtgctcctcctggcactgcccttcacggttcaatgatggtaga 181
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 taagatgaggcctctgggcgctcctcctggcactgcccttcacagttcaatgatggtaga 382
Query: 182 gccacaggcccaggaagggaaagaaaacccctgaattctctgcatctgttcctgggctga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccacaggcccaggaagggaaagaaaacccctgaattctctgcatctgttcctgggctga 442
Query: 242 cctcagtagctggcccacagccagtaggctgggagcctgaagagagatgagtcagaggag 301
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctcagtagctgccccacagccagtaggctgggagcctgaagagagatgagtcagaggag 502
Query: 302 acagctcgggtgcagaagtacaagtcagaggcgcgggcaccggagactgcagcatctgta 361
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 503 acagctcgggtgcagaagtacaagtcagaggcgcgggcgctggagactgcagcatctgta 562
Query: 362 ttacttcagccggctgcgggcaccggagcgtcccgtgctttgctaaattatttatttctg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 ttacttcagccggctgcgggcaccggagcgtcccgtgctttgctaaattatttatttttg 622
Query: 422 ccctgtaaatgtattgctttcataatcagaaagaaaaaaaaaagaattgagcatttttt- 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ccctgtaaatgtattgctttcataatcagaaagaaaaaaaaa-gaattgagcattttttt 681
Query: 481 cttttctttaaaaaaaaa-gaaagaaaga 508
|||||||||||||||||| ||||||||||
Sbjct: 682 cttttctttaaaaaaaaaagaaagaaaga 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d02.g1 MSMg01no384_d02.g1 CHROMAT_FILE:
MSMg01no384_d02.g1 PHD_FILE: MSMg01no384_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:26 2005
(421 letters)
>mm_chr4_44167310_44168130
Length = 821
Score = 605 bits (313), Expect = e-177
Identities = 319/321 (99%)
Strand = Plus / Minus
Query: 1 aaaacaaattttttcgaaaagacaggcccatctaataattcagtcgttttctgagttcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 aaaacaaattttttcgaaaagacaggcccatctaataattcagtcgttttctgagtttgg 262
Query: 61 ttctagtagcaccaagtgtcactgggaatcttacatcagaagtagcaattcgtattaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttctagtagcaccaagtgtcactgggaatcttacatcagaagtagcaattcatattaggt 202
Query: 121 aggtggggcacacctttttaattccagtgtttagaaggtagaagtgggtagatctctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggggcacacctttttaattccagtgtttagaaggtagaagtgggtagatctctgaa 142
Query: 181 ttcaaggccggcctgggctactgtcttcaaaaacaaaaaagtatgtaatagaatacaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ttcaaggccggcctgggctactgtcttcaaaaacaaaaaagtatgtaatagaatacaaca 82
Query: 241 taaacatgcctgtaatcccacactcagaacaaggaaggaggaggattagaagttcaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 taaacatgcctgtaatcccacactcagaacaaggaaggaggaggattagaagttcaaagt 22
Query: 301 tattcttccctatagaacaag 321
|||||||||||||||||||||
Sbjct: 21 tattcttccctatagaacaag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
