Query= MSMg01no384_d05.b1 MSMg01no384_d05.b1 CHROMAT_FILE:
MSMg01no384_d05.b1 PHD_FILE: MSMg01no384_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:27 2005
(528 letters)
>mm_chr4_131414274_131415202
Length = 929
Score = 946 bits (489), Expect = 0.0
Identities = 513/527 (97%), Gaps = 12/527 (2%)
Strand = Plus / Plus
Query: 5 gaattcctctgaaagcagaggccaagcaggcgctggggcaagcatttcatttgggaagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcctctgaaagcagaggccaagcaggcgctggggcaagcatttcattagggaagtg 264
Query: 65 gtccctagaatcaggagcaagggaatgagtcagcaagacaagacgggggg-aggcagaac 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 gtccctagaatcaggagcaagggaatgagtcagcaagacaagacgggggggaggcagaac 324
Query: 124 ccactaaggctttgcccattaagcccattaaggcagagcctggcctcagtcttgctaggg 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 ccactaaggctttgcccattaag---------gcagagcctggcctcagtcttgctaggg 375
Query: 184 atgccctcatgttcttcatatgacacactacagaattaactccagaagacagaagactgg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgccctcatgttcttcatatgacacactacagaattaactccagaagacagaagactgg 435
Query: 244 ccagtttgtttctgttgcttctgagggctttgtctgtcttgtttacagttctgggaatag 303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 ccagtttgtttctgttgcttctgagagctttgtctgtcttgtttacagttctgggaatag 495
Query: 304 aatcagggcctggggtatgccgagcagtaggtctaccacagacctgtgccagcctagccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aatcagggcctggggtatgccgagcagtaggtctaccacagacctgtgccagcctagccc 555
Query: 364 tcccactgtgtgaaatctctctctct--actgcctgactgagccacacagggctggaaaa 421
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 556 tcccactgtgtgaaatctctctctctctactgcctgactgagccacacagggctggaaaa 615
Query: 422 attacctactgttgaggaaattgaggcaagaactgctggactatgataaaattagatagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 attacctactgttgaggaaattgaggcaagaactgctggactatgataaaattagatagc 675
Query: 482 cactgaccaagaccctggaccatgatgggagtcctaggtgcctttgg 528
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cactgaccaagaccctggaccatgatgggagtcctaggtgcctttgg 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space: 476042
Effective search space used: 476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_d05.g1 MSMg01no384_d05.g1 CHROMAT_FILE:
MSMg01no384_d05.g1 PHD_FILE: MSMg01no384_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:27 2005
(517 letters)
>mm_chr4_131562740_131563656
Length = 917
Score = 992 bits (513), Expect = 0.0
Identities = 516/517 (99%)
Strand = Plus / Minus
Query: 1 tgttggtgattaaatccaaatatattagctttttgaggtttaggggtttgcctggagcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgttggtgattaaatccaaatatattagctttttgaggtttaggggtttgcctggagcat 658
Query: 61 tgttttgcttataatagttcccttttcttcttccttttaataggaacatcatgacaacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgttttgcttataatagttcccttttcttcttccttttaataggaacatcatgacaacag 598
Query: 121 agaagagtttagcggctgaagctgagaattctcagcaccagcaacagaaggaagaaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 agaagagtttagcggctgaagctgagaattctcagcaccagcaacagaaggaagaaggag 538
Query: 181 agggagccacaaactcaggccaacaagaaactcagctggaggaggcctcccaagcggctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 537 agggagccacaaactcaggccaacaagaaactcagctggaggaggcctcccaagcggccg 478
Query: 241 cagctgagggcagcgatcagggtgagcagaagctgaaagcatccaatggggacactccaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagctgagggcagcgatcagggtgagcagaagctgaaagcatccaatggggacactccaa 418
Query: 301 cacatgaagacttgaccaagaacaaggaacggacatcagaaagcagaggcctgtcacgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cacatgaagacttgaccaagaacaaggaacggacatcagaaagcagaggcctgtcacgac 358
Query: 361 tgctctcctcattcctcaaaaggcccaagtcgcaggtctctgaagaagaaggcagagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgctctcctcattcctcaaaaggcccaagtcgcaggtctctgaagaagaaggcagagaag 298
Query: 421 tagaatcagagaaagagaaaggtgaagggggtcagaaggagatagaacttggaaacagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tagaatcagagaaagagaaaggtgaagggggtcagaaggagatagaacttggaaacagcc 238
Query: 481 ttgatgaagacatcattttaaaggcccccattgcagc 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgatgaagacatcattttaaaggcccccattgcagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
