Query= MSMg01no384_i24.b1 MSMg01no384_i24.b1 CHROMAT_FILE:
MSMg01no384_i24.b1 PHD_FILE: MSMg01no384_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:53 2005
(315 letters)
>mm_chr4_33371416_33372130
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%)
Strand = Plus / Plus
Query: 1 cacctcggctttgaagtaaccttccataaatagtcagtgattgttatctgaggtttatgg 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctcggctttgaagtaaccttccgtaaatagtcagtgattgttatctgaggtttatgg 260
Query: 61 agctgctgattcacagagcctttgtatggctaaccaggaagtctaggatgactgagaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgctgattcacagagcctttgtatggctaaccaggaagtctaggatgactgagaatt 320
Query: 121 gcttaggtaagggttccttcagtcaactcctaaagcagagaagagattttggcatgtgga 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttaggtaagggttccttcagacaactcctaaagcagagaagagattttggcatgtgga 380
Query: 181 aattgacttgctgaaaagtgccttctgtgtaacaacaaagaggcttctgcaaggtagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattgacttgctgaaaagtgccttctgtgtaacaacaaagaggcttctgcaaggtagttc 440
Query: 241 tgtggtcagtctcctgactctgacccaccctgctgcggagaagcctatttccatactgcg 300
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgtggtcagtctcctgacgctgacccaccctgctgcggagaagcctaaatccatactgcg 500
Query: 301 gtgtctctcct 311
|||||||||||
Sbjct: 501 gtgtctctcct 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no384_i24.g1 MSMg01no384_i24.g1 CHROMAT_FILE:
MSMg01no384_i24.g1 PHD_FILE: MSMg01no384_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:53 2005
(491 letters)
>mm_chr4_33547105_33547994
Length = 890
Score = 888 bits (459), Expect = 0.0
Identities = 465/467 (99%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 25 aataacaatgtgtaattgtgtgtatatgtttccatgtgtgtccacatattcatgtggagg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aataacaatgtgtaattgtgtgtatatgtttccatgtgtgtccacatattcatgtggagg 831
Query: 85 ccagaggctgacacccagtgcttcccaagtgactcccttacgactactgaagagcagggg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ccagaggctgacacccagtgcttcccaagtgactcccttacgactactgaagagcagggg 771
Query: 145 ctctctctcccagaacctggagctccatgcttgccccagggacctgtctttctcccagtc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctctctctcccagaacctggagctccatgcttgccccagggacctgtctttctcccagtc 711
Query: 205 ttagagactggaattacaggaaggaactgaagtcacactctcccatttgcatggcaaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttagagactggaattacaggaaggaactgaagtcacactctcccatttgcatggcaaaca 651
Query: 265 cttacctactgaaccacttctctggaccatgacgtgaatatgttaggatctctaaagtaa 324
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 650 cttacctactgaaccacttctctggaccatgatgtgaatatgttaggatctctaaagtaa 591
Query: 325 cagctcccttattttggagagctgaaggataagttaacagctattttgcagaaaaagaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cagctcccttattttggagagctgaaggataagttaacagctattttgcagaaaaagaaa 531
Query: 385 tcctcaaagcttcagtgataagtctgttgttgttcacttctttttcttactaatcttgct 444
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 530 tcctcaaagcttcagtgataagtctgttgttgttcacttc-ttttcttactaatcttgct 472
Query: 445 ttcaaaatcaagataacttcttcaatccttattattataaatccaag 491
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttcaaaatcaagataacttcttcaatccttattattataaatccaag 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
