BAC Information

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BAC

Clone NameMSMg01-384O23
Chromosome4 (Build37)
Map Location 23,589,661 - 23,590,181
singlet/doubletsinglet
Overlap genenone
Upstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
Downstream geneLOC623873, LOC664973, F730047E07Rik, Klhl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384O23.T7 (MSMg01no384_o23.b1)MSMg01-384O23.TJ (MSMg01no384_o23.g1)
ACCAG488253AG488254
length763770
length of high quality
(start - end)		525 (34 - 558)494 (63 - 556)
definitionCHROMAT_FILE: MSMg01no384_o23.b1 PHD_FILE: MSMg01no384_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:21 2005CHROMAT_FILE: MSMg01no384_o23.g1 PHD_FILE: MSMg01no384_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAACA
TTCCCTGTTACTCTGGAATAATCTTAGTGTTTAACTTAATATTGAACACA
ATTATTTGTAATATGATTTTAAGATGATGATGATGTAGCTGATCAGATCA
TTTAGGTAAAAATACTGATATAATTGTGCTGTCTCCTCTGGGTACAGGCC
ATCCCAATCCAATGTCCTTGAAATGGTGGCTGTACTCCCAGAGTTCAGGA
GAGTAGTGAGTAAAAGGAAGAAGAGGCAAAGTGAAAAGAAATTAGGGAAG
AAATTAGGAAGACTTCTCATTCTTCGCCAACCAATTTCCTGAGGTAGGCA
GAGCCTTTCTAACTCAGTCCCCGGATTTTTTGTGGTGCAAAATTAGGAAA
GAGGATGAGTAGGCATAGATCAGTAGAAATCTGAGGATAAGGTGAGAAAT
GAATAGGGGCCTAATATAACCTAGGAAGAAAGATTGCTGGTGAAGAATGT
CTGACCGGATTATAGAAAGAGACTAGAAAACAGTCAATGGGAAAGAAGTT
TCTGGATTTTTTTTTTTTGACATTTTAACAAATTTTGATTGTANGCCTCT
TTTTAAGTTGTTTGAGAAACTTTTAACATTGACATCCTGGTCATTATTAT
TCTGGGGTAGGTTCATAATTACTATTACTGGGAAAAAAACCTTCTTGAAC
ATGGAAACTTTATCCCTCTGAACAGCCTGATTCCTTGTCTATTCATAAAC
CCATAATTTTATT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATGAAGAGGTATTGT
ATTTTGTCAAATATTTTTCAGTATCTAATGAGGTGACCCAGTGATTTTTT
TCCTTTGAGTTTGCTTATATAGTGGATTATGTTAATGGATTTTTGTATAT
TTAACCAACCTTACATTCCTGGGATGAAGTCTACTTGGTTAATGGTGGAT
GATGTTTTTGATGTGTTCTTGGCTTTTGATGTGAGAAAATTTTATTATTT
ATGCATCGATATTCATAGGGGAAATTGGTCTGAAGTTCTTTTTTCTTGTT
GGGTCCTTGTGTAGTTTAGGTATCAAAGTAATTGTGGATTGATAGAATGA
ACTAGGTAGTGTTCCTTCATAAGCAACCCCAAAAATTCAACCAGAGAAAT
TCTACAGCTGATAAACATCTTCAGCAAAGTGGCTAGATATAAAATTAGCT
CAAATAAATCAGTAGCCTTCCTTTACAAATGATAAACAGGCTGAGAAAGA
AATTAGAGAAACAACACCCTTCACAATGGTCACAAATAATATAAAATATC
TTGGAGGTAACTCCAAACCAACAAATGAAAGATCTCTGAAAAAATAATTT
CAAGCCTTTCAGAAAAAAATTGTAGAGGATCTCCCAAAATGGGGAAATCC
CCCTGGCCATGGATTGGGAGAATTAAACACTAAAAAGGGCCTCTCCCCCA
AGCATCCTCGATTTAATGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_o23.b1 MSMg01no384_o23.b1 CHROMAT_FILE:
MSMg01no384_o23.b1 PHD_FILE: MSMg01no384_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:21 2005
         (525 letters)



>mm_chr4_23589457_23590381
          Length = 925

 Score =  969 bits (501), Expect = 0.0
 Identities = 516/521 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaacattccctgttactctggaataatcttagtgtttaacttaatattgaac 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattcagtaacatagactgttactctggaataatcttagtgtttaacttaatattgaac 666

                                                                       
Query: 65  acaattatttgtaatatgattttaagatgatgatgatgtagctgatcagatcatttaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 acaattatttgtaatatgattttaagatgatgatgatgtagctgatcagatcatttaggt 606

                                                                       
Query: 125 aaaaatactgatataattgtgctgtctcctctgggtacaggccatcccaatccaatgtcc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaaaatattgatataattgtgctgtctcctctgggtacaggccatcccaatccaatgtcc 546

                                                                       
Query: 185 ttgaaatggtggctgtactcccagagttcaggagagtagtgagtaaaaggaagaagaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttgaaatggtggctgtactcccagagttcaggagagtagtgagtaaaaggaagaagaggc 486

                                                                       
Query: 245 aaagtgaaaagaaattagggaagaaattaggaagacttctcattcttcgccaaccaattt 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 aaagtgaaaagaaattagggaagaaattaggaagacttctcattcttcgctaaccaattt 426

                                                                       
Query: 305 cctgaggtaggcagagcctttctaactcagtccccggattttttgtggtgcaaaattagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 cctgaggtaggcagagcctttctaactcagtccccggattttttgtggtgcaaaattagg 366

                                                                       
Query: 365 aaagaggatgagtaggcatagatcagtagaaatctgaggataaggtgagaaatgaatagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaagaggatgagtaggcatagatcagtagaaatctgaggataaggtgagaaatgaatagg 306

                                                                       
Query: 425 ggcctaatataacctaggaagaaagattgctggtgaagaatgtctgaccggattatagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggcctaatataacctaggaagaaagattgctggtgaagaatgtctgaccggattatagaa 246

                                                    
Query: 485 agagactagaaaacagtcaatgggaaagaagtttctggatt 525
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 agagactagaaaacagtcaatgggaaagaagtttctggatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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