XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCT
TCTCCACAAAAATTTGGCTAGCATTGGAGTGTGCTTGAGGGTATACCCAG
TCATTTACATCTTTCTCAAAGAATGTATACTAATAGCTCCCTCTTAAGAA
AATTAACTATTAAGTTAAGCCCATGTCATTGTTCCTTACACTAACCTCTA
CTCAGTCCAAACCTGTTGTGGATAGCCCTGGGGCTAATTATATTTGATGT
TAAATCTGTTCTCCTGTGAGGGGTTGTGAACAAGGAATGAGTCAGCACTC
AGGTGATTTCCTGTAAAAGGGAAGGTGGAGCAGAAGGAGAGAGAGAGAGA
GAAGAAGAAGAAGGAGAAATGGAAGAGGGAGAGGACACAGAGGAGGAGGA
GGAAGAAGGAGAAAAGCAGAGCAGAAGCACGTGGCCTGGAGAAACTGCAA
GTTCTAAGGGGTTCTCATAAGCTGTGGAAGATGTTAGTGTAGTGGTAGAT
CTGCCCAATCTAGGCATGTAGCGTGTAATCATGTTAACTGTGTTATGTTT
TCATTGCAGGGCATATTTGGGGGGAAATTTACTGCTATACATATCAGTCA
TATAATCGGGGTTCTATAACTGGGATTATGAGATGGACAAGAACTTATTC
CAGGGTTATCTGGTTGGAAAAGTGTGTTCATTTGGTATTTCTTTATAACA
TTTTTTTCGTAGGGGGTAACATTTTTTTTCCAACACCACATTTTGGGGGG
TGG

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGTGTAGCTCTGTATCCCATTTCTTAATTGGATT
ATTTGGTTTTATGAAGGTTTGCTTCTTGAGTTCTTTATATATTTTGGATA
TTAGACCTCTTTTGGATGTCAGATTACTAAAGATCTTTCCCCAATCTGTA
GGTTTTTGTTTTGTTTTATTGACAGTGTCTTTTGCCTCACAGAAACTATT
TTGTTTTATGAGGTTGTTTAGGGTCTGTTATGATTAATCTTTATTGTTAG
CAGGACTGGATTTAGAATCACCTAGGAGATATTCCTCTGGGTGTGTCTGT
GTTGGAGCTTCTAGAGAGGTTTAAATAAAGACATGGCCTAAACTTGGGCA
GTACTGGCCCAAGACCTGGATGCATGATGAAAGGGAAAGAGGGGGAAGCC
CCATGAGAACCAGCATTCCTCTCTGTTTCCTCCTGACTGTGGAAGAGATG
TAAACAGCTATGTCATTCTCCTGCCATCTGCCCTTGCCACCTTGATGGAC
GGTATCCTCTCAGACGTTTAGGTGAATATTCCTTTCTTTCCCCCAACTAT
TTATTGTCAGGTATTTTGTTACAGTCGCAGAATGTAACACCATTGCGGGA
AAGTCACCAATTGAGGGCTCCATAATAAACACCATTAATTATTTAGTGTG
TATGAAACCATTACATATATTTTCCTGACCCTN

Query= MSMg01no384_p04.b1 MSMg01no384_p04.b1 CHROMAT_FILE:
MSMg01no384_p04.b1 PHD_FILE: MSMg01no384_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:22 2005
         (469 letters)



>mm_chr4_93030165_93031034
          Length = 870

 Score =  665 bits (344), Expect = 0.0
 Identities = 453/516 (87%), Gaps = 55/516 (10%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccttctc-cacaaaaatttggctagcattggagtgtgcttgagggtatacc 62
           |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcttccttcacacacaaaaatttggctagcattggagtgtgcttgtgggtatacc 263

                                                                       
Query: 63  cagtcatttacatctttctcaaagaatgtatactaatagctccctcttaagaaaattaac 122
           ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 cagtcatttacatctctctcaaagaatgtatactagtagctccctcttaagaaaattaac 323

                                                                       
Query: 123 tattaagttaagcccatgtcattgttccttacactaacctctactcagtccaaacctgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattaagttaagcccatgtcattgttccttacactaacctctactcagtccaaacctgtt 383

                                                                       
Query: 183 gtggatagccctggggctaattatatttgatgttaaatctgttctcctgtgaggggttgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtggatagccctggggctaattatatttgatgttaaatctgttctcctgtgaggggttgt 443

                                                                       
Query: 243 gaacaaggaatgagtcagcactcaggtgatttcctgtaa--------------------- 281
           ||||| |||||||||||||||||||||||||||||||||                     
Sbjct: 444 gaaca-ggaatgagtcagcactcaggtgatttcctgtaatcctgcttctcactttaattt 502

                                                                       
Query: 282 --------aagggaag-g-tg--ga----gcaga----agg--ag----ag-ag-agaga 313
                   |||  ||| | ||  ||    |||||    |||  ||    || || |||||
Sbjct: 503 gtaaaataaag--aagagctgatgattgggcagataaaagggaaggtggagcaggagaga 560

                                                                       
Query: 314 gagaagaagaagaaggagaaatggaagagggagaggacacagaggaggaggaggaagaag 373
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaga-ga-gaagaaggagaaatggaagagggagaggacacagaggaggaggaggaagaag 618

                                                                       
Query: 374 gagaaaagcagagcagaagcacgtggcctggagaaactgcaagttctaaggggttctcat 433
           |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 619 gagacaagcagagcagaagcatgtggcctggagaaactgcaagttctaagggggtctcat 678

                                               
Query: 434 aagctgtggaagatgttagtgtagtggtagatctgc 469
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 679 aagctgtggaagatggtagtgtagtggtagatctgc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)