GTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAACCTCTCATA
AATCTTGCTAGTCTCCCTAAATCTGTGAAAAGTATTAGAAGACTCTGAGC
AAAGGTGAAATTCTCTGTTTGTTTCCCCTCCTACTTTTCAGAGGGGAAAT
CGCAAAGGCAAAGACAGTTTTGTGCAGAGTCCTGACTCTTTTCTCTCTCA
GTCTCTCCCATTGCACTCAGGAGATCACAAGCTAAAGACTAACCTTGAAG
GAGAAAAAAGACCAAAAAGAAGACATCATTTTTCAAAAGGCAACTTGAGC
AAGATAGAGAGAGAAAAAATGTTGTCAAATGAGCTTTAGACAAACCCTAC
TTCTCTATTTAGATAGGATGGCGCTGACCTTTTAAGTAACTGAAACATAG
ACATGTAAACAGTTTAGCAATGCTTGCTATGGAACTGGGACTTTTTATGG
CTCCATCTCTGAAACTTTCATCCTAATATCATATTGTGTGTGGAAGAGAA
AACCAGTGTTCATGTCATTTGCTAGGCTCTTAAGCTGTTAAACCCGATAC
TGAGCTCTGATGAATCACTATAATTTAAAGAATATGGCCACGATTGCAGG
GGTATGTTTGGGATACTGGTAATGGGGAAATGAGTATACACTGACTGTGA
AAATAAAACTAAACACCAGTTCTTTCCCAATGATAAAATCACATGCCTTT
TGTGGAATTTGCATTCATGCGTAATTCTGGAAGGTGTGGAAATAGGTTTT
GGGGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGAACCCGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGATAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACTCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACAAAA
AGGAATACTACTCAGCTATTAAAAATGAATTTATGAAATTCCTAGGCAAA
TGGATGGACCTGAAGGGCATCATCCTGAGTGAGTTAACCCAATCACAAAG
GAACTCGTACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAAAT
TAGGATACCCAAGATATAAGATACCAATTGCTATATGCTTGGAATTCCCG
ACAACGAAGACTCAAGTGTGGACACTTTGCCCCAAATTAGAAATGTGAAC
AAAN

Query= MSMg01no385_l05.b1 MSMg01no385_l05.b1 CHROMAT_FILE:
MSMg01no385_l05.b1 PHD_FILE: MSMg01no385_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:20 2005
         (571 letters)



>mm_chr4_28974229_28975200
          Length = 972

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%), Gaps = 1/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-aaacctctcataaatcttgctagtctccctaaatctgtgaaaagtattagaag 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaacctctcataaatcttgctagtctccctaaatctgtgaaaagtattagaag 264

                                                                       
Query: 64  actctgagcaaaggtgaaattctctgtttgtttcccctcctacttttcagaggggaaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actctgagcaaaggtgaaattctctgtttgtttcccctcctacttttcagaggggaaatc 324

                                                                       
Query: 124 gcaaaggcaaagacagttttgtgcagagtcctgactcttttctctctcagtctctcccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaaggcaaagacagttttgtgcagagtcctgactcttttctctctcagtctctcccat 384

                                                                       
Query: 184 tgcactcaggagatcacaagctaaagactaaccttgaaggagaaaaaagaccaaaaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcactcaggagatcacaagctaaagactaaccttgaaggagaaaaaagaccaaaaagaa 444

                                                                       
Query: 244 gacatcatttttcaaaaggcaacttgagcaagatagagagagaaaaaatgttgtcaaatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacatcatttttcaaaaggcaacttgagcaagatagagagagaaaaaatgttgtcaaatg 504

                                                                       
Query: 304 agctttagacaaaccctacttctctatttagataggatggcgctgaccttttaagtaact 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctttagacaaaccctacttctctatttagataggatggcgctgaccttttaagtaact 564

                                                                       
Query: 364 gaaacatagacatgtaaacagtttagcaatgcttgctatggaactgggactttttatggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 gaaacatagacatgtaaacagtttagcaatgcttgctatggaactggaactttttatggc 624

                                                                       
Query: 424 tccatctctgaaactttcatcctaatatcatattgtgtgtggaagagaaaaccagtgttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccatctctgaaactttcatcctaatatcatattgtgtgtggaagagaaaaccagtgttc 684

                                                                       
Query: 484 atgtcatttgctaggctcttaagctgttaaacccgatactgagctctgatgaatcactat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgtcatttgctaggctcttaagctgttaaacccgatactgagctctgatgaatcactat 744

                                       
Query: 544 aatttaaagaatatggccacgattgcag 571
           ||||||||||||||||||||||||||||
Sbjct: 745 aatttaaagaatatggccacgattgcag 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)