Query= MSMg01no386_a12.b1 MSMg01no386_a12.b1 CHROMAT_FILE:
MSMg01no386_a12.b1 PHD_FILE: MSMg01no386_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:45 2005
(488 letters)
>mm_chr4_149145384_149146271
Length = 888
Score = 739 bits (382), Expect = 0.0
Identities = 468/516 (90%), Gaps = 37/516 (7%)
Strand = Plus / Plus
Query: 4 gaattccagacctgttcacacaaaataaacaaacaaaaacaactcaatcttatatttaaa 63
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 189 gaattccagacctgctcacacaaaataaacaaacagaaacaactcaatcttatatttaaa 248
Query: 64 gttagtataaaattgggttggggcatatataaactcggaa-ctcttcccaaag-gc---- 117
||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||
Sbjct: 249 gttagtataaaattgggttggggcatatatacactcggaacct-ttcccaaagtgcttat 307
Query: 118 --------------ctgtggtggtctttctttctgttctcgtctctgagggcaatatgct 163
||||||||| | |||||||||||| ||||||||||||| |||||
Sbjct: 308 ttctagattttggtctgtggtgg-c---ctttctgttctcttctctgagggcaacatgct 363
Query: 164 acactgaacatctgaccagtatatgttaatataggaaataatctttggaaataatccaga 223
|||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 acactgaaaatctgactagtatatgttaatataggaaataatcttgggaaataatccaga 423
Query: 224 aacttgttcctttaagaaaaaaaaaattaaagactatgagttggccggacagtggtgtca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 424 aacttgttcctttaagaaaaaaaaaattaaagactatgagttggccggacagtggtggca 483
Query: 284 cacacctttgatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggcca 343
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 484 cacacctttgatcccagcacttgggaggcagagacaggcggatttctgagttcaaggcca 543
Query: 344 gcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctctctgga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctctctgga 603
Query: 404 aaaaccaaaaac-----------aaacaaacaaacaaaaaagactatgaattgttttggt 452
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaaccaaaaaccaaaaataaacaaacaaacaaacaaaaaagactatgaattgttttggt 663
Query: 453 gcagtctgtttttttttccaggatctaaaatagatt 488
|||||||||||||||| |||||||||||||||||||
Sbjct: 664 gcagtctgtttttttt-ccaggatctaaaatagatt 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_a12.g1 MSMg01no386_a12.g1 CHROMAT_FILE:
MSMg01no386_a12.g1 PHD_FILE: MSMg01no386_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:45 2005
(654 letters)
>mm_chr4_149298847_149299900
Length = 1054
Score = 1031 bits (533), Expect = 0.0
Identities = 563/573 (98%)
Strand = Plus / Minus
Query: 82 tttaacatttttatttttaaaacggtgtatatgtgtgtgtacatgtatgtagtaccacag 141
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1054 tttaacatttttatttttaaaacggtgtatatgtgtgtgtacatgtatgcagtaccacag 995
Query: 142 atgctagagaggacatcaggccccctggatctggaattacgggtgctagtgaaccaccag 201
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 994 atgctagagaggacatcaggccccctggatctggaattacggatgctagtgaaccaccag 935
Query: 202 acatggggtgccggaaactgaattcagtcctctgcaagagtagtgctttctctagatcgc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 acatggggtgccggaaactgaattcagtcctctgcaagagtagtgctttctctagatcgc 875
Query: 262 tgagccatctctccagccctatggtgggatggaccttcaggcagctttgtgctttaaaac 321
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgagccatctctccagccccatggtgggatggaccttcaggcagctttgtgctttaaaac 815
Query: 322 aatgtggtgctcacacagcagagcattttgtgttaagatttaaccacatggacgccaggt 381
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 814 aatgtggtgctcacacagcagagtattttgtgttaagatttaaccacatggacgccaggt 755
Query: 382 aaacatccatcacaagatgcacaaacacacgtcacctattaatcctccaaactgccacac 441
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aaacatccatcacccgatgcacaaacacacgtcacctattaatcctccaaactgccacac 695
Query: 442 agagggctcttcttcctgcacattcatggtattctctgattgtctcaggagcctctgggg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agagggctcttcttcctgcacattcatggtattctctgattgtctcaggagcctctgggg 635
Query: 502 ctggggctggtatttaatcttctccattttgcaaaagtgaaaaacgagcccaagcatgct 561
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 634 ctggggctggtatttcatcttctccgttttgcaaaagtgaaaaacgagcccaagcatgct 575
Query: 562 gaaggtggagtcggtcttacactgtttccctaagaggcacctacttagatacttcccaac 621
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaaggtggtgtcggtcttacgctgtttccctaagaggcacctacttagatacttcccaac 515
Query: 622 tcctctgtcctggttcttacctatgtgtgtggg 654
|||||||||||||||||||||||||||||||||
Sbjct: 514 tcctctgtcctggttcttacctatgtgtgtggg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
