Query= MSMg01no386_d20.b1 MSMg01no386_d20.b1 CHROMAT_FILE:
MSMg01no386_d20.b1 PHD_FILE: MSMg01no386_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:00 2005
(245 letters)
>mm_chr4_40314029_40314673
Length = 645
Score = 466 bits (241), Expect = e-136
Identities = 245/247 (99%), Gaps = 2/247 (0%)
Strand = Plus / Minus
Query: 1 tgcagagagatcctcctgcctctgcctccagaatactgggcttaaagatatatatcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgcagagagatcctcctgcctctgcctccagaatactgggcttaaagatatatatcacca 458
Query: 61 tatccaacac--agcagttgcaagtgatcctggggtgtgttattaactttggatgaaaaa 118
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tatccaacacagagcagttgcaagtgatcctggggtgtgttattaactttggatgaaaaa 398
Query: 119 gttaggatgtaagagatgttttcatcataatattgtgtcacgacagcccgctgtgattac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gttaggatgtaagagatgttttcatcataatattgtgtcacgacagcccgctgtgattac 338
Query: 179 ttccacccaccaccaatccaatacctcttatactgcaggtatttttcagacattaactct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttccacccaccaccaatccaatacctcttatactgcaggtatttttcagacattaactct 278
Query: 239 actattc 245
|||||||
Sbjct: 277 actattc 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_d20.g1 MSMg01no386_d20.g1 CHROMAT_FILE:
MSMg01no386_d20.g1 PHD_FILE: MSMg01no386_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:00 2005
(249 letters)
>mm_chr4_40116648_40117296
Length = 649
Score = 205 bits (106), Expect = 2e-57
Identities = 139/170 (81%), Gaps = 31/170 (18%)
Strand = Plus / Plus
Query: 109 cagcaaatgattttgtaaagaacaatatatatttc------------------------- 143
|||||||||||||||||||||||||||||||||||
Sbjct: 278 cagcaaatgattttgtaaagaacaatatatatttccagtttaaaaaaaaaaaaactgttc 337
Query: 144 ------tgaacagtatctttttcagctttgcaggtgataaaaaaatgaaataaatatttc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagagctgaacagtatctttttcagctttgcaggtgataaaaaaatgaaataaatatttc 397
Query: 198 tagtatcatattcttttatcagtataattacgattaaaccttaattatca 247
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tagtatcatattcttttatcagtataattacgattaaaccttaattatca 447
Score = 157 bits (81), Expect = 7e-43
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 30 agtgctgcatggttagactgtgtctcaaaacaagacagaaaagaaaaggaatatgtaatc 89
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 1 agtgctgcatggttagactgtgtctcaaaacaaaacagaaaagaacaggaatatgtaatc 60
Query: 90 tacttaggaatataagactcagcaaatgatttt 122
|| ||||||||||||||||||||||||||||||
Sbjct: 61 tatttaggaatataagactcagcaaatgatttt 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
