Query= MSMg01no386_f06.b1 MSMg01no386_f06.b1 CHROMAT_FILE:
MSMg01no386_f06.b1 PHD_FILE: MSMg01no386_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
(653 letters)
>mm_chr4_51473236_51474286
Length = 1051
Score = 1212 bits (627), Expect = 0.0
Identities = 646/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 1 gcattctcattagaaacagcatgcccaaaattcacactagacctgcagactcctcagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcattctcattagaaacagcatgcccaaaattcacactagacctgcagactcctcagcca 260
Query: 61 gtggacacagagacctagtaatatatttccattgtccttgttgctatactcaggtcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggacacagagacctagtaatatatttccattgtccttgttgctatactcaggtcccaa 320
Query: 121 atgaaaagctcatagattttgatgaggattaattaccaccctgtttcccatgttaggagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaaagctcatagattttgatgaggattaattaccaccctgtttcccatgttaggagc 380
Query: 181 atgttaggtcctctgagcctgatcctacaatattgccttatgattagtttatcagaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgttaggtcctctgagcctgatcctacaatattgccttatgattagtttatcagaacta 440
Query: 241 atgatggtttaagtgtgaggcatgaaaatttaaagccaattgcctgggaattttctcact 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 atgatggtttaagtgtgaggcatgaaaacttaaagccaattgcctgggaattttctcact 500
Query: 301 gtgactacaggtccctaagtctatgtccatagtttaaaaatgatgttgagatttcaagaa 360
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 501 gtgactacaggtccctaagtctatgtccatagcttaaaaatgctgttgagatttcaagaa 560
Query: 361 caataaggctaattaaaaaataaggtgcttgaatattgaactattttgttaatataaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caataaggctaattaaaaaataaggtgcttgaatattgaactattttgttaatataaaga 620
Query: 421 ttgaaaaagaaatgtataagcctgactattagaagtataaagtagttactttcagaaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaaaagaaatgtataagcctgactattagaagtataaagtagttactttcagaaaga 680
Query: 481 aagaaaaatggtaactataaagagaaaagaagagcgcttatatgatgctcctggggttga 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaaaaatgataactataaagagaaaagaagagcgcttatatgatgctcctggggttga 740
Query: 541 ttttaacagttacacagaactgccaagagtgcagacccgggctgccatactattcagtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttaacagttacacagaactgccaagagtgcagacccgggctgccatactattcagtgt 800
Query: 601 ttgtctgaaaatatcttttttttttaaatggatccgtaggaggcattggaaat 653
|||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 801 ttgtctgaaaatatcttttttttt--aatggatctgtaggaggcattggaaat 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space: 669363
Effective search space used: 669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_f06.g1 MSMg01no386_f06.g1 CHROMAT_FILE:
MSMg01no386_f06.g1 PHD_FILE: MSMg01no386_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:07 2005
(586 letters)
>mm_chr4_51632973_51633959
Length = 987
Score = 897 bits (464), Expect = 0.0
Identities = 543/588 (92%), Gaps = 33/588 (5%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacagagaaaccctgtctcaaaaaaactaaaaacaaacaaaac 60
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caggacagccagggctacacagagaaaccctgtctcaaaaaaact--------------- 817
Query: 61 aaaacaaaacaaaacaaaacaaaacaaaacaaaaccaaaccaaaaacattcatattgttg 120
||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 816 ----------aaaacaaaacaaaacaaaaca-----aaaccaaaaacattcatattggtg 772
Query: 121 aaaagcaaaagaaacgtattctaaatgctaacttttcattttcca-actccatttaatca 179
| |||||| |||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 771 acaagcaagagaaacttattctaaatgctaacttttcatttt-cagactccatttaatca 713
Query: 180 gggagaaactaaattcaaggtctcaggctgtagggaatgtggggagttccctatacctga 239
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct: 712 gggagaaactaaattcaaggtctcaggctgtagggaatctggggacttccctatgcctga 653
Query: 240 acaacttttgatgtagcctgttgtctgagtgcagatatcgcacagacaagttgaaaggag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acaacttttgatgtagcctgttgtctgagtgcagatatcgcacagacaagttgaaaggag 593
Query: 300 actgatgtctgagttcagtcaagtcaaagaaaaagtctccatcttgctggcaaggtcaaa 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 actgatgtctgagttcagtcatctcaaagaaaaagtctccatcttgctggcaaggtcaaa 533
Query: 360 caagatcatgttctcaggcttagaaacgtacattaatactacttcaaatgttttct-agc 418
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 532 caagatcatgttctcaggcttagaaatgtacatttatactacttcaaatgttttcttagc 473
Query: 419 tgttgaatcataaagaatatagaaattgctgttatctaatccaaggtgtgtaagttgtaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgttgaatcataaagaatatagaaattgctgttatctaatccaaggtgtgtaagttgtaa 413
Query: 479 gaagagttccctgttaacccctaattaagtacatgcagctgatactctcccgtgtcccct 538
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaagagtttcctgttaacccctaattaagtacatgcagctgatactctcccgtgtcccct 353
Query: 539 tatcactctgtgctccagacctaaagtctaagagattgaattaagaac 586
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatcactctgtgctccagacctaaagtctaagagattgaattaagaac 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 987
Length adjustment: 10
Effective length of query: 576
Effective length of database: 977
Effective search space: 562752
Effective search space used: 562752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
