Query= MSMg01no386_g19.b1 MSMg01no386_g19.b1 CHROMAT_FILE:
MSMg01no386_g19.b1 PHD_FILE: MSMg01no386_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:14 2005
(684 letters)
>mm_chr4_10182495_10183578
Length = 1084
Score = 1237 bits (640), Expect = 0.0
Identities = 679/702 (96%), Gaps = 18/702 (2%)
Strand = Plus / Plus
Query: 1 tctaaaggtctgtgctagcgaggcacaatgctaagagtgatttcttccaaaatgcttact 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 183 tctaaaggtctgtgctagcgaggcacaatgctaaaagtgatttcttccaaaatgcttact 242
Query: 61 aaccaaaagcaacatttccatgtgcagaaaatatgggtgtcctcgtttatttggaagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaccaaaagcaacatttccatgtgcagaaaatatgggtgtcctcgtttatttggaagaat 302
Query: 121 aggtaagcacactgacattttcttcagatctgataacttcttttggaaatagtgtccttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aggtaagcacactgacattttcttcagatctgataacttcttttggaaatagtgtccttg 362
Query: 181 ctttttaaagtcataacttcagtaacccatttgacctaactttgctgaagtatgacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctttttaaagtcataacttcagtaacccatttgacctaactttgctgaagtatgacaaat 422
Query: 241 agaattgtgtatattataagtgtacaatatagtattttgatatacaaagacattacaaca 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agaattgtgtatattagaagtgtacaatatagtattttgatatacaaagacattacaaca 482
Query: 301 tgactaccaaaatcaagcttattcatttccgcacatgattgtattttgcacatcccccct 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 483 tgactaccaaaatcaagcttattcatttccgcacatgattgcattttgcacatcccccct 542
Query: 361 ctttttttctctctgtctctgtctctgcctctgtctctctgtctctgtgtctctgtctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctttttttctctctgtctctgtctctgcctctgtctctctgtctctgtgtctctgtctct 602
Query: 421 ctctgtctctctctgtctctctct----------ctctctctgtgtg-tg-------gtg 462
|||||||||||||||||||||||| ||||||||||||| || |||
Sbjct: 603 ctctgtctctctctgtctctctctgtctctctctctctctctgtgtggtgtgtgtgtgtg 662
Query: 463 tgtgtgtgtgtgtgtgtgtgtgtacatgcacatctgcatatgtgtaagcataagagagag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tgtgtgtgtgtgtgtgtgtgtgtacatgcacatctgcatatgtgtaagcataagagagag 722
Query: 523 aagaggcctttacacagaattgaatgcacaactacattggaaaaaattagtattagtcaa 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 aagaggcctttacacagaattgaatgcacaactacattggaaaaaattagtattagtcaa 782
Query: 583 gaagaaaattatattgtacctaaggagaattttgctcttttaaattatagctgcttttgt 642
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 783 gaagaaaattaaattgtacctaaggagaatttggctcttttaaattatagctgcttttgt 842
Query: 643 tctggaactttctctaatcctctcttttgtctctctagctag 684
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tctggaactttctctaatcctctcttttgtctctctagctag 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_g19.g1 MSMg01no386_g19.g1 CHROMAT_FILE:
MSMg01no386_g19.g1 PHD_FILE: MSMg01no386_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:14 2005
(613 letters)
>mm_chr4_10347825_10348837
Length = 1013
Score = 743 bits (384), Expect = 0.0
Identities = 393/396 (99%), Gaps = 1/396 (0%)
Strand = Plus / Minus
Query: 1 ctgtgcacatagcaagaattatcactgattaaggaagtagatgtgctgagaataaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctgtgcacatagcaagaattatcactgattaaggaagtagatgtgctgagaataaaggca 336
Query: 61 cagcaatcaattcatgtgtgtatatgagtagctataccttactacattctagtaagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cagcaatcaattcatgtgtgtatatgagtagctataccttactacattctagtaagttct 276
Query: 121 aaatcacggtagagttgtatttgtatttttatttttgattatctctttggtccaagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaatcacggtagagttgtatttgtatttttatttttgattatctctttggtccaagagtt 216
Query: 181 attaagaatgatattagctgactcagacagatgcagatacccacagccaaacagtagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 attaagaatgatattagctgactcagacagatgcagatacccacagccaaacagtagaga 156
Query: 241 gagcttcctcaagtctcttttggaataataggaggaaggatcgtgatctctcaagggata 300
|||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 155 gagcatcctcaag-ctcttttggaataataggaggaaggatcgtggtctctcaagggata 97
Query: 301 ggaactccacaggaagagcaacagaatcaactaacctggacccttctcgctctcagagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ggaactccacaggaagagcaacagaatcaactaacctggacccttctcgctctcagagag 37
Query: 361 tgaaccaccaaccaaagaacatacaagggctggacc 396
||||||||||||||||||||||||||||||||||||
Sbjct: 36 tgaaccaccaaccaaagaacatacaagggctggacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
