Query= MSMg01no386_n24.b1 MSMg01no386_n24.b1 CHROMAT_FILE:
MSMg01no386_n24.b1 PHD_FILE: MSMg01no386_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:46 2005
(454 letters)
>mm_chr4_32840278_32841131
Length = 854
Score = 480 bits (248), Expect = e-139
Identities = 248/248 (100%)
Strand = Plus / Minus
Query: 1 catcagaattgggcattggaacccattacagacggttgcgagctaccatgtggttgctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catcagaattgggcattggaacccattacagacggttgcgagctaccatgtggttgctga 519
Query: 61 gaattgaactctggaagacctctggaagagtagccagtgctcttaacagctgatctattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattgaactctggaagacctctggaagagtagccagtgctcttaacagctgatctattt 459
Query: 121 ctccagcacctaaactcagtgctttcattaaaatctaaacctactactgaagtcctgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctccagcacctaaactcagtgctttcattaaaatctaaacctactactgaagtcctgtgt 399
Query: 181 cacatccacaccaaaggtcagcaccattcagaaaggctggatgattcagacactcggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cacatccacaccaaaggtcagcaccattcagaaaggctggatgattcagacactcggcac 339
Query: 241 tcactttc 248
||||||||
Sbjct: 338 tcactttc 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no386_n24.g1 MSMg01no386_n24.g1 CHROMAT_FILE:
MSMg01no386_n24.g1 PHD_FILE: MSMg01no386_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:46 2005
(616 letters)
>mm_chr4_32707762_32708777
Length = 1016
Score = 1106 bits (572), Expect = 0.0
Identities = 604/616 (98%), Gaps = 3/616 (0%)
Strand = Plus / Plus
Query: 1 agtgatcgcagaatctgttacccaggttctaatgagaggaataggaagagaggtgttagg 60
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 201 agtgatcgcagaatctgttacccaggttctattgagaggaataggtagagaggtgttagg 260
Query: 61 attgtccatgtgatgataggggcctagggagagcgtagcaggctggcatgcaaatatagt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 attgtccatgtgatgataggggcctagggagagcgtagcaggctagcatgcaaatatagt 320
Query: 121 tatggaagcagccattggagaagaaaggagatggtaggtcttagactctgaagatggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggaagcagccattggagaagaaaggagatggtaggtcttagactctgaagatggaga 380
Query: 181 aaggaggctccagaccaggaatgcaggtgcttttagaaactggaaaatgtgaacagcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggaggctccagaccaggaatgcaggtgcttttagaaactggaaaatgtgaacagcctc 440
Query: 241 tctcaaagtctatagaaccacagccctgatgacagcttgattgtagaccagtaagatttc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaaaccctatagaaccacagccctgatgacagcttgattgtagaccagtaagatttt 500
Query: 301 ttttggtagtaaggactgaaaccagagcattgtgcttgctgattatgttgtgccacaggg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 ttttggtagtaaggactgaaaccagagcattgtgcttgctgattatgttgtgccacagag 560
Query: 361 ccatcttcctcatcccctaatacaaacacacactcacacattcaatacagatacaatttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatcttcctcatcccctaatacaaacacacactcacacattcaatacagatacaatttt 620
Query: 421 tgaaaaaatctatagttagttgaatttctggattctaatttaatggttatagaaggcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaaaaaatctatagttagttgaatttctggattctaatttaatggttatagaaggcaaa 680
Query: 481 atatactttctgggatatttattaggaaatacaacatgtctttaaaattatttttatatt 540
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 atatactttttgggatatttattaggaaataca---tgtctttaaaattatttttatatt 737
Query: 541 ttgtatgtatgggtgtatgtacagctgtgcactgcatgcatgtctggtgtccatggaaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttgtatgtatgggtgtatgtacagctgtgcactgcatgcatgtctggtgtccatggaagc 797
Query: 601 caagagggggctttag 616
||||||||||||||||
Sbjct: 798 caagagggggctttag 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
