TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGGCTAGCACATGGAGGACAAGACAATAAATGTCTAGTCCAT
GTAAAAACTGCACAGCAATATAACTACTATGTGGAACAATAACAGAAATC
AGCAATAGCATCAGCCTTATCAGGAAAATGGATCTGCTTAAAATGAAAAC
AAAGAAAACAAATATATAAGGATGTATTAATTCCTGTAAAGCTTGCAACA
ACGTGGGATATGAATCTACATACCTATACTAGTTATCAACACAAGCTAAG
GTCATCTGAAAAATGAAGCTTCAGTTAAGAAAATTGCTTCAGCAAATTAG
CTTTTTAAACAAGGTCTGTGTGGTATATTCTTGGTTAATTATGGTGTGGA
GAGAGGACAGCCCACTGAAACTAGTAAGAGGGTCCTGCGTTATGTAAAAG
CACAGGCTGTGCAAGCCATGATTGGGTAAGCCAATAATTAGTATTCTAAC
CTCATCTCTGCTTCAGATTTCTGCGTTGAGTCCCTGCTCCATCTTCCCGC
CATGATAGAGATGAACTGTAAACTGAAATAAACCCTTTCCTCCCCAGATG
GCTTTTGGTCATGGTGCCCATCACAGAAACTAATAAAAACATCCCAAGAA
GACTACACCTAAATATCCCCCTAATACTGCGACGCCCACACCCTGTACTC
CTAAATGCCTTTCCCGCCTGCACCACCGCACGG

NNCCAATGCTATNGNNTANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCTCCTCGGCTTCAAGGATT
TTTCTAGGACGTTGGAACACTGGTGAAGGCTTACCTATGTCAGAATTCAA
TCTTTAAAGGCACCGATAATAAAACAATACTTAAAGAGAGCACATGGATC
CATACAACAGACAAACAAACACGNNAATAGGGAATGAATATACCNNAAAA
AAAAGCATATNNNAACGCACTCCNATAACTAAAANNATTANNNNNNNNNN
NNNNCNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGTGGTG
GTGTGGGGGGGGTGGGGGGGGGGNCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTNTCCNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTNNTTNNN
NNNTTNNNTNNNNNNNNNTNNNNNNNTNNNTNNTNNNTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNTTTNNNNNNTNNNNNNTTNTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNTTNNTNNNTTNNNNNTTTTNNT
NNNNNNNTNTTNNNNNNNNNNNNTNNNNNNNTTNTNNTTTTTTNTTTTTT
ATTTTTGTGAGGGGGGG

Query= MSMg01no387_b07.b1 MSMg01no387_b07.b1 CHROMAT_FILE:
MSMg01no387_b07.b1 PHD_FILE: MSMg01no387_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:02 2005
         (520 letters)



>mm_chr4_25229500_25230419
          Length = 920

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttggctagcacatggaggacaagacaataaatgtctagtccatgtaaaaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 444 gaattcactttggcaagcacatggaggacaagacaataaatgtctagtccacgtaaaaac 385

                                                                       
Query: 65  tgcacagcaatataactactatgtggaacaataacagaaatcagcaatagcatcagcctt 124
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcacagcaatataactactctatggaacaataacagaaatcagcaatagcatcagcctt 325

                                                                       
Query: 125 atcaggaaaatggatctgcttaaaatgaaaacaaagaaaacaaatatataaggatgtatt 184
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 324 atcaggaaaatggatctgcttaaaatgaaaacaaaggaaacaaacatataaggatgtatt 265

                                                                       
Query: 185 aattcctgtaaagcttgcaacaacgtgggatatgaatctacatacctatactagttatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 aattcctgtaaagcttgcaacaacgtgggatatgaatctacatacctatgctagttatca 205

                                                                       
Query: 245 acacaagctaaggtcatctgaaaaatgaagcttcagttaagaaaattgcttcagcaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 acacaagctaaggtcatctgaaaaatgaagcttcagttaagaaaattgcttcagcaaatt 145

                                                                       
Query: 305 agctttttaaacaaggtctgtgtggtatattcttggttaattatggtgtggagagaggac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agctttttaaacaaggtctgtgtggtatattcttggttaattatggtgtggagagaggac 85

                                                                       
Query: 365 agcccactgaaactagtaagagggtcctgcgttatgtaaaagcacaggctgtgcaagcca 424
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  agcccattgaaactagtaagagggtcctgcgttatgtaaaagcacaggctgtgcaagcca 25

                                   
Query: 425 tgattgggtaagccaataattagt 448
           ||||||||||||||||||||||||
Sbjct: 24  tgattgggtaagccaataattagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)