BAC Information

Click to search

BAC

Clone NameMSMg01-387P05
Chromosome4 (Build37)
Map Location 123,080,144 - 123,080,515
singlet/doubletsinglet
Overlap geneMacf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a
Downstream geneD830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387P05.T7 (MSMg01no387_p05.b1)MSMg01-387P05.TJ (MSMg01no387_p05.g1)
ACCAG490563AG490564
length775800
length of high quality
(start - end)
394 (68 - 461)372 (86 - 457)
definitionCHROMAT_FILE: MSMg01no387_p05.b1 PHD_FILE: MSMg01no387_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:09 2005CHROMAT_FILE: MSMg01no387_p05.g1 PHD_FILE: MSMg01no387_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCACCGCGGA
ATTCCAGGCCCATTCCAACGGTCCCTCAGCAGAACAGTGGCTCTGCTTGT
TATTAAGCATGGAGACTGCTAAGATCGCCATAGAACTCCCTGCAGGGGAG
GCAGATGTAGTTGGACATCTGGCTCAGTTGGTAGAATGCTTGCCTACTGA
ACATAAAACACTGGATTCAACTCACAGCAATGCATACACTGGATAAGATG
GGGCCCACCTATGCTTCCAGCCCTAGAGAGATGAAGGCAGGGGGAATCAG
AAGGTCAAGGTCAGCTGCGCAGCCAGTCCACAGCCAGTCTGGATTACATG
AGACCCCATCACAAAAAGAAGGAAGCAAACTTTCCCCTTCATGATGGCCC
AACTGCATTCGTGGGAATGGAGCAGAATATGTTCGAAAGAAAATAGAAGC
TAGCAAGACGTTCAAATCCAAAATCGACTTGATGTTTGCACCTCCATTCA
ATTGGTGTGTATCCATGCCGTCAAAGCAATGATCAGAATGTCCCATGTAG
AAAATAGTCCTGCCCCCAGCCCCTGGGTATCCCCTGCAAATGTCCCCTGC
CCCCTCCCCTCCCCTGGGAATGGCTTTTATTGCAATTCCCCCCTGCCCGA
AGAAAAACCATAAAAGGGGCCCCCGGCCTATCCCCCTGGGGTTCCGCGGC
CCTCCCAATTTCGCGGACCCCCCCCCCCTTTCCTCTGTGGTTACCCCCCC
CCCCAAAGTCCCCCTGGGCGCCCCG
CCCCCTCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATGTTGCTTA
ACAAAATACAATACAATTACAAGTTGTAATATAAAGTAGAGTGCCCTGAT
AATTCCTTCATGGCCTTTTTGAGTTTTTGCTGGGCCTTTCCTTCTCTATG
GACTGACTTATCCATCCATAGGCATTCCTTTGAATAGACTCACCTCTCTT
ACTGAAACTGAAAAAACTTTATATAGAAGAAAAGAGGGGGAGGGGGCTAT
AGCCAAGCTGGTAAAAATGTGGCTAATTTTATATTCTAGTAATTGAGACA
AACCAATTCTTAAGTAAAAATGTTTGCATAATTCTTTCCCTTAAGATTAT
TCATTGGGCAAATGTGTGTGAAAACTAAAATTTTGGCATTTCTTTGTTTT
GTTTTTTGTCTTTGAGATGAGGTCTCATATACCCCCGAGAGGGCCTCTTA
TTGTATGTGTGGACTGATGGTGACCATGGTCCTCCCTCCTCCCGATCGCG
TGCGTTTTTTTCCCTCCGCTGTCTTGTACTCACTTTCTACATGAACATTT
CTTCGAACTGCACTTCTACACTTTTCTTCCTTCCGTATCTCCCCTTATTT
CTCTTGACCCCCATTTATTTCTCTTCCTAATCATTTCTTTATCCTCGTAT
CCCTTCTTATATCTCTTTGTCTACCTTATTTTACCCTCCTACTCTCGCTC
CTTTTACTTCCTTCCTCTCCCCTACGTCTTCTTTAGTTACAATTCCCCCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_p05.g1 MSMg01no387_p05.g1 CHROMAT_FILE:
MSMg01no387_p05.g1 PHD_FILE: MSMg01no387_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:09 2005
         (372 letters)



>mm_chr4_123079944_123080715
          Length = 772

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatatgttgcttaacaaaatacaatacaattacaagttgtaatataaagtagagtgcc 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 572 tttatatgttgcttaacaaaatacaatacgattacaagttgtaatataaagtagagtgcc 513

                                                                       
Query: 61  ctgataattccttcatggcctttttgagtttttgctgggcctttccttctctatggactg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctgatgattccttcatggcctttttgagtttttgctgggcctttccttctctatggactg 453

                                                                       
Query: 121 acttatccatccataggcattcctttgaatagactcacctctcttactgaaactgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acttatccatccataggcattcctttgaatagactcacctctcttactgaaactgaaaaa 393

                                                                       
Query: 181 actttatatagaagaaaagagggggagggggctatagccaagctggtaaaaatgtggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 actttatatagaagaaaagagggggagggggctatagccaagctggtaaaaatgtggcta 333

                                                                       
Query: 241 attttatattctagtaattgagacaaaccaattcttaagtaaaaatgtttgcataattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 attttatattctagtaattgagacaaaccaattcttaagtaaaaatgtttgcataattct 273

                                                                       
Query: 301 ttcccttaagattattcattgggcaaatgtgtgtgaaaactaaaattttggcatttcttt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 272 ttcccttaagattattcattgggcaaatgtgtgtgaaaactaaagttttggcatttcttt 213

                       
Query: 361 gttttgtttttt 372
           ||||||||||||
Sbjct: 212 gttttgtttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)