Query= MSMg01no387_p14.b1 MSMg01no387_p14.b1 CHROMAT_FILE:
MSMg01no387_p14.b1 PHD_FILE: MSMg01no387_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:11 2005
(373 letters)
>mm_chr4_29172390_29173162
Length = 773
Score = 694 bits (359), Expect = 0.0
Identities = 368/371 (99%)
Strand = Plus / Minus
Query: 3 gaattctatcacgttataccaatcggcacaactccgactttccaaaccgaccaccagtgg 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 573 gaattctatcacgttaaaccaatcggcacaactccgactttccaaaccgaccaccagcgg 514
Query: 63 cagctcttctctcatttgtaatgctaagcacacactgcttctgcccattctagttctaag 122
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 513 cagctcttctctcatttgtaatgctaagcacacactgcttctgcccattatagttctaag 454
Query: 123 ctttttccttaagctgttttccctctcaagaaagtcgtctgtaccttaatgatagcacca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctttttccttaagctgttttccctctcaagaaagtcgtctgtaccttaatgatagcacca 394
Query: 183 gatattttgactcatccagagaggacatgttccttaatctaaaatgactgtgcaggggaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatattttgactcatccagagaggacatgttccttaatctaaaatgactgtgcaggggaa 334
Query: 243 atcatgctgttcaaggtcacagtctcttggttggcctaaagcaaattaatcaaactaggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atcatgctgttcaaggtcacagtctcttggttggcctaaagcaaattaatcaaactaggt 274
Query: 303 taggacattcactttaccctattgataccaagtgccttctatgaacagcacatgccctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taggacattcactttaccctattgataccaagtgccttctatgaacagcacatgccctct 214
Query: 363 ggttatttcct 373
|||||||||||
Sbjct: 213 ggttatttcct 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no387_p14.g1 MSMg01no387_p14.g1 CHROMAT_FILE:
MSMg01no387_p14.g1 PHD_FILE: MSMg01no387_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:11 2005
(364 letters)
>mm_chr4_29049554_29050318
Length = 765
Score = 675 bits (349), Expect = 0.0
Identities = 361/367 (98%), Gaps = 5/367 (1%)
Strand = Plus / Plus
Query: 1 ccacatggtccaggttctgagggcatcaggatatgatggagccaacatttttccagtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacatggtccaggttctgagggcatcaggatatgatggagccaacatttttccagtgta 260
Query: 61 tagtaattggtgtgcatatgtagggatttacagtttgcctcctgttattggcatttcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtaattggtgtgcatatgtagggatttacagtttgcctcctgttattggcatttcttc 320
Query: 121 atgacagttgttaaaggaatatttctgctttattttgttgttgttattgtttatatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacagttgttaaaggaatatttctgctttattttgttgttgttattgtttatatttaa 380
Query: 181 acactacaccaaagagacaatcttttctcctgtattgctgctggtggaggagaagtgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acactacaccaaagagacaatcttttctcctgtattgctgctggtggaggagaagtgaca 440
Query: 241 gggtcctcttaaa---caggaagacagggagaaaatctggaaccagattttttttcctgt 297
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtcctc--aaaaaacaggaagacagggagaaaatctggaaccagattttttttcctgt 498
Query: 298 ggtttcagaatgatttaggttttgatatttcttttggtaaggttgatctacctagttcct 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 499 ggtttcagaatgatttaggttttgatatttcttttgggaaggttgatctacctagttcct 558
Query: 358 taccctt 364
|||||||
Sbjct: 559 taccctt 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 765
Length adjustment: 9
Effective length of query: 355
Effective length of database: 756
Effective search space: 268380
Effective search space used: 268380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
