BAC Information

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BAC

Clone NameMSMg01-388C15
Chromosome4 (Build37)
Map Location 95,218,795 - 95,219,354
singlet/doubletsinglet
Overlap genenone
Upstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
Downstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388C15.T7 (MSMg01no388_c15.b1)MSMg01-388C15.TJ (MSMg01no388_c15.g1)
ACCAG490724AG490725
length1,762746
length of high quality
(start - end)
---558 (81 - 638)
definitionCHROMAT_FILE: MSMg01no388_c15.b1 PHD_FILE: MSMg01no388_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:26 2005CHROMAT_FILE: MSMg01no388_c15.g1 PHD_FILE: MSMg01no388_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTCTCTCTCTCTTACTCTATCATACGCTACTCCNACATAACTCACT
CATATACTCTACTAATCGCTCGTAGACACACGCTCCGCCGTCGACGNCTC
GCTGCCCCGCGTCTCCCTCGCCCTCAANGCTCGCCCACACCAGGTCTAGT
CTACTTACTACCACAACTATATATCCTATAGCTTTCGAAGACACTACACT
ACATATAATCACGTANATGCTCAGATCGTTCTNCATGCCGATAACACAAT
TTCATACACAGATACGCATCCTCTCGTTCTACNGCTCACACCTCANCTCA
GTTAAATGNTGAGCACGCTNAGCTAGTGATCATACGACTGCACCAACTGT
CTACTCTCGCACTCGTCAGCATAATTATCTCTACTTATCACTTGTACCCT
CTGCATCATCCACTTCTTCCCTCTATTGTCACTGTAACNTTAGCTGCGGT
CCGTCTCATCATTGCCTCTCCGCGTCTTATAAGGCTCGTGAACAGAGGCG
AACCGTGTATGATTCATTCATAAATTTATCACTGACTAGCGCTTAGACGA
GACCGACATGCTATAACTATNATCTCACTCATATCTCTGAATGCTGTGCG
AACGNATACATACATACACTCGACGCAGTATATTATTGTCAACGTTCGCG
CTGTCACGCATCAGCGCACGTCGTCGCTACAGTCTGATCCTCAACTCTTC
TGCTCACTTATATATATTCAATACGACNAGNTAGTGACGCANTGNCGCTG
ACTATCGGAATGTGTAGTATATCGCACTACGCTCTCCGAATGCACGCCGT
CGCTGATGCTACATGACCNCGACTAGTAAATAATATGTAGTCCNCTTCGT
CACTGCACTGTCTCCGTTACATCCTCACTACTAATCGCTCACTGCCCACT
CTCGCGCTATTCCACCNTCGTCNTATATATTCGAGCNATCACTCACTTCT
CGGCGCCGTCTCCACTACGCTAGTGTTGATCATCTCACTCGTCCTGACAC
TCAGCTTCTCTGCACATGTCNTCCCGNCTGCATCGAGCGTACTCACAGAG
AGTATACAGATACGTACTCGTCACACTGATGACGTCTCACCGCCCTGTCA
CTGTTATAGTCCATCGTATATCTCTCGCGTAANTGCAGTACGCTATACCC
ATCAGCTAGTTACGCCGCCACGACTATATAACTCCTATACAGCTCTGCTA
CTGACGTCTCGATACTCAGTCACTATAGCGACTTGTCATATCGTATCGTG
ACGTCGGTATCGCGTTCTNGACGACACCATCGATACGCCTGCTCGTCAGA
CCATGCTGCATGACTACTATACATACANATCTTGGATGTGTGCTCTGACA
GTAGCATNCANACACACTCACAATATACATACAACTATACTCTGCTTCTC
TCGTAGACNANCTGCGACGTCTACGTCACATTACACATACGCTAGATCGC
GACTCACGTTTCCTAATATATATCATNANCAACATCATAGATACATCGCA
GTCTACGCCTCTCAGTTATAATGTCTCTATGCTACGCGAGATACTACGCT
GANTCGCACTAGCACTGACTCGGACTACACGATTATCGTACACACAATTA
TACACATATGACCACGTGCATCACTATCAACGTACACACCACTACATCAT
GTATACATGACACGTCTATCTCTACTATCATGACATGCTCTATNCAATCT
CTATACTCTATCTCTATCACTGCTATCTACTACACTATATATCATCNTNG
TTCACTCACGCN
NCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACTGGAACAAGTGAGTG
GACTATGTAACCCTCATATAGCTCTTGGAAGTAGGTAGTATCAGTCCCAT
TTCACAGAGGAAGACTGAAGCTGAGAACTTAAACCATACGACTGATAGGT
TCTGGGGTTAACATTCACACCTGATTTCTATTTTCTTTTTGATTTTTAAT
TTTTAATTCTGTTGCATGTTGCTAACCCTTTACAGTGTGCAGGTGAGAGA
TTGTTTTATACTTCTTGTACCTTATCAAACTCTATCTTCATGAAGACTTC
TCCTTTAGGACTGAGTGGTCCAAAGCCTCCCACTCTCTGCACATTGCCCA
GATGTGGTTGTTTGTGTTAGTGCCTATCTCCTTAGGAGAAAGCTTCTCTG
ACAATGGCTGAGCAAGGCATTGGTCTATGTGCACAGCAGAATGTGACTAG
GACTCATTTATTGCTATGTTCCTTTAGGAGAACAAGAATATTTGGTTTTC
TGCTATGTTCATGGCCTGTCTAGTCTCAGGTTCTTTTGGGGAGGATCCAA
GGGGACTTGGGGTAGGGAAAACTATAATTGGAATATATTGTATGACAAGA
AATATTTTCCATATAAATTACAAACCCAACTTAACCGATCCCTTTATTTT
TTATATAAAGGTTATAGAATATCCAAGACCCCTTAATTATTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_c15.g1 MSMg01no388_c15.g1 CHROMAT_FILE:
MSMg01no388_c15.g1 PHD_FILE: MSMg01no388_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:26 2005
         (558 letters)



>mm_chr4_95218597_95219554
          Length = 958

 Score = 1033 bits (534), Expect = 0.0
 Identities = 553/560 (98%), Gaps = 2/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatactggaacaagtgagtggactatgtaaccctcatatagctcttggaagtaggtagta 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 199 aatactggaacaagtgagtggactatgtaaccctcgtatagctcttggaagtaggtagta 258

                                                                       
Query: 61  tcagtcccatttcacagaggaagac--tgaagctgagaacttaaaccatacgactgatag 118
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 259 tcagtcccatttcacagaggaagacactgaagctgagaacttaaaccatacgactgatag 318

                                                                       
Query: 119 gttctggggttaacattcacacctgatttctattttctttttgatttttaatttttaatt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttctggggttaacattcacacctgatttctattttctttttgatttttaatttttaatt 378

                                                                       
Query: 179 ctgttgcatgttgctaaccctttacagtgtgcaggtgagagattgttttatacttcttgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgttgcatgttgctaaccctttacagtgtgcaggtgagagattgttttatacttcttgt 438

                                                                       
Query: 239 accttatcaaactctatcttcatgaagacttctcctttaggactgagtggtccaaagcct 298
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accttaccaaactccatcttcatgaagacttctcctttaggactgagtggtccaaagcct 498

                                                                       
Query: 299 cccactctctgcacattgcccagatgtggttgtttgtgttagtgcctatctccttaggag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cccactctctgcacattgcccagatgtggttgtttgtgttagtgcctatctccttaggag 558

                                                                       
Query: 359 aaagcttctctgacaatggctgagcaaggcattggtctatgtgcacagcagaatgtgact 418
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaggcttctctgacaatggctgagcaaggcattggtctatgtgcacagcagaatgtgact 618

                                                                       
Query: 419 aggactcatttattgctatgttcctttaggagaacaagaatatttggttttctgctatgt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggactcatttattgctatgttcctttaggagaacaagaatatttggttttctgctatgt 678

                                                                       
Query: 479 tcatggcctgtctagtctcaggttcttttggggaggatccaaggggacttggggtaggga 538
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcacggcctgtctagtctcaggttcttttggggaggatccaaggggacttggggtaggga 738

                               
Query: 539 aaactataattggaatatat 558
           ||||||||||||||||||||
Sbjct: 739 aaactataattggaatatat 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)