BAC Information

Click to search

BAC

Clone NameMSMg01-388F08
Chromosome4 (Build37)
Map Location 81,757,140 - 81,757,452
singlet/doubletsinglet
Overlap genenone
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388F08.T7 (MSMg01no388_f08.b1)MSMg01-388F08.TJ (MSMg01no388_f08.g1)
ACCAG490854AG490855
length770758
length of high quality
(start - end)
508 (33 - 540)548 (68 - 615)
definitionCHROMAT_FILE: MSMg01no388_f08.b1 PHD_FILE: MSMg01no388_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:39 2005CHROMAT_FILE: MSMg01no388_f08.g1 PHD_FILE: MSMg01no388_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAAATA
ATTCCTTTAAATGCCTTAGTCTCTTAAATTACATAGAAAAAAAAACCCTG
TGATTTACAACTCAAAGTTTAAAAAGTGCATAAGTTTTAAAAATCAATTT
CTTGAGTAAATAGTAAATGAAAATGGGCTGGCTCTTAAAATCATGTATGT
ACTTATGTTTATTAACCTCTTTACAAAAAGTGATATTACATGAATGTATA
TCTGTGCACTATACATGTGCCTGGTGCACACAGAGGCTGTTGTGTACCAG
AAAGCATTGGCTACCATAAAATTAGATTTATTAAATAGTTGTGAGCCCTC
ATCTGTGTGCTAGGTATTTAACCTAGGTCTTCTGGAAGAGCAGACAGTGC
TCTTAAATGCTGACCCATATCTTTAGCTTGATATTTTCAGCTCTCATTGA
TTGGAAAGCTCTGAGTGTCTGTCTATTGTCTCTTGAGCATTTCATCTAGG
GAAAGGCTAAAGACAATGCACTTGTGCAGTACCTGTCTTCGAAGGAATGT
TCTCATTTCTTGTATACACTTGAGGGACAGGTTTGCTGGATATAAAATTT
ATGGTTGACAGTTTCTTTTTTCCCCTTAGAACTTTGACTCTTTCAGTCTC
TGACCTCTGCCCACCAGTCTCTAGAAACCCCTGGGAACCTTATTTAGGTT
TTAACAAATTGTCCCCCCCCGTTTTCAAAAAAATCCCCCCCCTTTGAAAA
ACTAATTATAAAGGGCCCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGCCCACAAAATAAATCTGACAGAGAATTCTA
GAGGTAATACTTCAGACTGAAAAAAAAGAAGTGAGCATTGCCATAAGACT
ATAGAAAGAAAACAAATATGGCTGACTGCTGAAAGCGAAACCAGGACTAA
GAACATAACATGGAAAAATAGCAGAGTGACAGCAGTCAGCAGTCAGTTTT
CAACAATAACTTGCAATATTAATGGCCTCAACTTCCTAATCAAAAAAAAC
GCAGGTTAGTTGTATGGACTAAGAAATAAGATCTTTCATTTTGCTATCTA
AAAGAGATACATATCACCTTTAAGAATAGGTTCCTCTTCAAAGTGAAAGG
TTGGGAAGAAAAGTATTCTAAGGAAATGGGATCAGGAGGTTTTGATAACC
TAATATCTGACAAAATAGACTTCAGTTAACCAAGGTTAATTAGAATAGAT
AAAGAAGGATACTTCATTATGATCAAGGTAACAATTAATTAAGAAGACAT
TATACTACTTAATATACATGCACTAAGTTCTCACATGTTCAGTTTTATAA
AAAAAAAAAAAGAACAACAACAAAAACAGAAACATTCTATTGCACTTGAA
AATAAAAATTAACCCTGACTCAGCAATAGTGAGTAATTTCAGTACCCCAG
TGTCTTAGCCAGGGTTTCTATTTCCTTACAAACATCCTGACCAAAAAGGC
AGTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_f08.b1 MSMg01no388_f08.b1 CHROMAT_FILE:
MSMg01no388_f08.b1 PHD_FILE: MSMg01no388_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:39 2005
         (508 letters)



>mm_chr4_81756545_81757452
          Length = 908

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 196 aagtgatattacatgaatgtatatctgtgcactatacatgtgcctggtgcacacagaggc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 aagtgatattacatgaatgtatatctgtgcactatacatgtgcctggtgcacacagaggc 849

                                                                       
Query: 256 tgttgtgtaccagaaagcattggctaccataaaattagatttattaaatagttgtgagcc 315
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 tggtgtgtaccagaaagcattggctaccataaaattagatttattaaatagttgtgagcc 789

                                                                       
Query: 316 ctcatctgtgtgctaggtatttaacctaggtcttctggaagagcagacagtgctcttaaa 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctcatctgtgtgctaggtatttaacctaggtcttctggaagagcagacagtgctcttaaa 729

                                                                       
Query: 376 tgctgacccatatctttagcttgatattttcagctctcattgattggaaagctctgagtg 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 728 tgctgacccatatctttagcttgatattttcagctctcattgattggaaagctttgagtg 669

                                                                       
Query: 436 tctgtctattgtctcttgagcatttcatctagggaaaggctaaagacaatgcacttgtgc 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tctgtctattgtctcttgagcatttcatctagggaaaggctaaagacaatgcacttgtgc 609

                        
Query: 496 agtacctgtcttc 508
           |||||||||||||
Sbjct: 608 agtacctgtcttc 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)