Query= MSMg01no388_f14.b1 MSMg01no388_f14.b1 CHROMAT_FILE:
MSMg01no388_f14.b1 PHD_FILE: MSMg01no388_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:40 2005
(554 letters)
>mm_chr4_110152950_110153903
Length = 954
Score = 828 bits (428), Expect = 0.0
Identities = 428/428 (100%)
Strand = Plus / Minus
Query: 127 cttataccttatcagcaagaaaagttttctctgcaataaacagagaccacttcagagaac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 cttataccttatcagcaagaaaagttttctctgcaataaacagagaccacttcagagaac 895
Query: 187 agaaaacaataaaaccctagtcccaatagatatatctacaaactattcctgcacctcaga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 agaaaacaataaaaccctagtcccaatagatatatctacaaactattcctgcacctcaga 835
Query: 247 ctcagggaacattgtggaacactatgaacttcatagatggcaatgttgtgtcataatgtc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ctcagggaacattgtggaacactatgaacttcatagatggcaatgttgtgtcataatgtc 775
Query: 307 aaaaggttatacatacctggaagtgagtttatagcacaactacgtataatacaagatctg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaaaggttatacatacctggaagtgagtttatagcacaactacgtataatacaagatctg 715
Query: 367 accagaagaaaaccgaatcttatatgctgtgttaaaccacctaaataaatccttgaatta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 accagaagaaaaccgaatcttatatgctgtgttaaaccacctaaataaatccttgaatta 655
Query: 427 aactatatcatatgaaatctgtatatgccaaacaaattattttaaatggctactggattg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aactatatcatatgaaatctgtatatgccaaacaaattattttaaatggctactggattg 595
Query: 487 tgttcaccaataaatggttaacaatatttctcagtctaatggaaaggatgttacgaatta 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgttcaccaataaatggttaacaatatttctcagtctaatggaaaggatgttacgaatta 535
Query: 547 tactctca 554
||||||||
Sbjct: 534 tactctca 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_f14.g1 MSMg01no388_f14.g1 CHROMAT_FILE:
MSMg01no388_f14.g1 PHD_FILE: MSMg01no388_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:40 2005
(536 letters)
>mm_chr4_109986456_109987391
Length = 936
Score = 965 bits (499), Expect = 0.0
Identities = 520/533 (97%), Gaps = 10/533 (1%)
Strand = Plus / Plus
Query: 4 acaaggtgtaacccagattatgagaactatagatggaatcagtctgtaccactctttgcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 204 acaaggtgtaacccagattatgagaactatagatggaatcagtctgtaccactctgtgcc 263
Query: 64 attgtcctctgagtaggttctctatgactgtagattatttttccagtctataaaaggtca 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 attgtcctctgagtaggttctctgtgactgtagattatttttccagtctataaaaggtca 323
Query: 124 tgggtgctattggaactctagtcaggcatcaactttaggccatcatttctccatcaaagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggtgctattggaactctagtcaggcatcaactttaggccatcatttctccatcaaagg 383
Query: 184 aaagagagcttctacatttcgcagacatgagcatcctagattacccatagtgctcaagtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagagcttctacatttcgcagacatgagcatcctagattacccatagtgctcaagtg 443
Query: 244 ttatttgagtaatttattgagatagcaaaggccttttgcatctgatcatgctgggaagaa 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcatttgagtaatttattgagatagcaaaggccttttgcatctgatcatgctgggaagaa 503
Query: 304 tggagtaagtttggcatccttacacctaccgagttggcgacagacatattcctcaggagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggagtaagtttggcatccttacacctaccgagttggcgacagacatattcctcaggagg 563
Query: 364 ttggaatgaaatttttgaatgttcagaggaaacctatatacatttaaggtgaaatctaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttggaatgaaatttttgaatgttcagaggaaacctatatacatttaaggtgaaatctaaa 623
Query: 424 gaataagagagaaaaacaaaacaaaacaaaacaaaacaacaaaagaaactcttaccattt 483
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 gaataagagagaaaaacaaaacaaaacaa----------caaaagaaactcttaccattt 673
Query: 484 gagcactaagaatagtcaaagcagaggaaacagctagtgcaaaggtccatcta 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagcactaagaatagtcaaagcagaggaaacagctagtgcaaaggtccatcta 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
