BAC Information

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BAC

Clone NameMSMg01-388H09
Chromosome4 (Build37)
Map Location 34,545,333 - 34,545,941
singlet/doubletsinglet
Overlap geneOrc3l
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik
Downstream geneRars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H09.T7 (MSMg01no388_h09.b1)MSMg01-388H09.TJ (MSMg01no388_h09.g1)
ACCAG490951AG490952
length771755
length of high quality
(start - end)
603 (34 - 636)609 (79 - 687)
definitionCHROMAT_FILE: MSMg01no388_h09.b1 PHD_FILE: MSMg01no388_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:48 2005CHROMAT_FILE: MSMg01no388_h09.g1 PHD_FILE: MSMg01no388_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGAATCACTATTTCGAGAGGATCCGCGGAATTCAAGGAGTT
TCCCGAGAACAGAGATAAGCAGCTCAGTGAAATAAAGGAAGAGACACTAA
GGAGACTAAATGTAGGTATGATGGCTGATGGAAATAATGAAGATAACCCA
AGACTTGAGTGTGGAATTCAGTCAGGAGACAGAAACACTGGAGGGAGGGA
AAGGGCTCAAGCTGGAAGGAAGACAAAACTGAAAAACCCAATAGCCCAAC
TAGAAAGCTTGAAGGAAAGACTTATAACTAAAATGATTCAAGCAGAAGGT
AAAATAGCAGGACTCAAATATAAAGTAGAGGGTCTAGACCAAATAAGTAA
GGAATATGAAAAACTAAACACACACACACACACGGGGAGAGGGGAGGAGC
ATACAGGAAATGTGGGATACCATGGAAAAAAACAAATGCTGCAAAAGATA
CATAATAGATAAGGGACAAAAAATGGCAAATCAATGACATAAACCAGGTA
TTCAACAAGATCACAGAACAAAACTTCCACAAACTATGGAAAGACATACC
CATATAGATAAAAGAAGCACACAGAACACCAGACAGGTACAGAAAAGATA
TTCTCCACAGCATGTCATGGTTAGTAAATATACAGAACCCCCTCAGAATA
ACAGCTGATTGCTCAATGTAATATTTGGAGCCTAGAGCAATGCATTCAAA
ACCTTAAGAGACTATATCAGCCAGCACTGACGAATACTCCTAAGTAAAAC
ATCTGCCATAACTGAGGGAAA
NCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAGGTGACAAGTGGTAAG
GCCCTGAAGAAGACAAATTATTCAATGGATTCTCTTTGTAGTTGGTATTC
GGCGGTCACACAGGTAAAGGAAACTGACTATCCGGTTAGTTGGCTCGCAA
TTACTTTACTTACAGCTCTCTGCTAAGAAGCATGTTTATGAGGCAATCAT
AGCACTTTGACGGTAGCTATTTTTTCTGAAGCTACTAGAATTTGAAAGTA
TTCTAATATGTAGACTAATTTTTGTTAAGTGCTTGGATTCTTACGAGGAC
ATTGTATTTGTGGGAGAGTTCCATGTAATGACAAGAAAACATCTGAAGTT
GGTTCTGCTACAGATTGTATTTTGGTAGTAATGACTGTAACTTCCCTATA
TTACTACTGGTAGTGTTCAGGATTTCTTTTTGTTCAGTAGACACATACCA
CCTTTTCATGCGTCAGCTTATTCCTTGAGTAATTCTATAATTTTTAAAAT
TTAGTTTGATCCATGCTTGGAAATCTTGGGGAAATGTTACAGTATAAATA
AGGTATATTGAACAAAACAGTATTTTATAAGTAAAATATATTCAAGACAA
TTATAAATTTCCTTCTACTATGACCATCTCTATTACAAATGAATGACACA
GAGGCCCCCTGAACTCCTGAGGTACAACCATAGTCCCAGTTATATTGCTG
GGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h09.g1 MSMg01no388_h09.g1 CHROMAT_FILE:
MSMg01no388_h09.g1 PHD_FILE: MSMg01no388_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:48 2005
         (609 letters)



>mm_chr4_34545133_34546141
          Length = 1009

 Score = 1116 bits (577), Expect = 0.0
 Identities = 601/609 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggaggtgacaagtggtaaggccctgaagaagacaaattattcaatggattctctttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 809 caaggaggtgacaagtggtaaggccctgaagaagacaaattattcaatggattccctttg 750

                                                                       
Query: 61  tagttggtattcggcggtcacacaggtaaaggaaactgactatccggttagttggctcgc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tagttggtattcggcagtcacacaggtaaaggaaactgactatccggttagttggctcgc 690

                                                                       
Query: 121 aattactttacttacagctctctgctaagaagcatgtttatgaggcaatcatagcacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aattactttacttacagctctctgctaagaagcatgtttatgaggcaatcatagcacttt 630

                                                                       
Query: 181 gacggtagctattttttctgaagctactagaatttgaaagtattctaatatgtagactaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 629 gacggtagctattttttctgaagctactagaatttgaaaatattctaatatgtagactaa 570

                                                                       
Query: 241 tttttgttaagtgcttggattcttacgaggacattgtatttgtgggagagttccatgtaa 300
           ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttcctggtaagtgcttggattcttacgaggacattgtatttgtgggagagttccatgtaa 510

                                                                       
Query: 301 tgacaagaaaacatctgaagttggttctgctacagattgtattttggtagtaatgactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgacaagaaaacatctgaagttggttctgctacagattgtattttggtagtaatgactgt 450

                                                                       
Query: 361 aacttccctatattactactggtagtgttcaggatttctttttgttcagtagacacatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 aacttccctatattactactggtagtgttcaggatttctttttgttcaggagacacatac 390

                                                                       
Query: 421 caccttttcatgcgtcagcttattccttgagtaattctataatttttaaaatttagtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caccttttcatgcgtcagcttattccttgagtaattctataatttttaaaatttagtttg 330

                                                                       
Query: 481 atccatgcttggaaatcttggggaaatgttacagtataaataaggtatattgaacaaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atccatgcttggaaatcttggggaaatgttacagtataaataaggtatattgaacaaaac 270

                                                                       
Query: 541 agtattttataagtaaaatatattcaagacaattataaatttccttctactatgaccatc 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agtattttataagtaaagtatattcaagacaattataaatttccttctactatgaccatc 210

                    
Query: 601 tctattaca 609
           |||||||||
Sbjct: 209 tctattaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)