BAC Information

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BAC

Clone NameMSMg01-388H13
Chromosome4 (Build37)
Map Location 73,790,289 - 73,790,655
singlet/doubletsinglet
Overlap geneFrmd3
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik
Downstream geneLOC100039774, Jmjd2c, LOC100040258, LOC100039814, LOC636847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H13.T7 (MSMg01no388_h13.b1)MSMg01-388H13.TJ (MSMg01no388_h13.g1)
ACCAG490959AG490960
length766763
length of high quality
(start - end)
455 (57 - 511)367 (326 - 692)
definitionCHROMAT_FILE: MSMg01no388_h13.b1 PHD_FILE: MSMg01no388_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:49 2005CHROMAT_FILE: MSMg01no388_h13.g1 PHD_FILE: MSMg01no388_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACATA
ATACCAGAGATAGTGAAATTTATAGAGTAGAAAGTGGGGGAAACCCTCGA
AGATATGGGCACAGGGGAAAAAATACCTAAACAGAACAGCAATGGCCTGT
GCTGTAAGATCAAGAATCAATAAATGGGACCTCATAAAATTGCAAAGTTT
CTATAGCGCAAAAGATACTGTCAATAAGACAGAAAGGCCACCAACAGATT
GGAAAAGAATTTTTACCAATCCTAAATCTGATAGGAGACTAATATCCAAT
ATATACAAAGAGCTCAATATGCTGGACTCCAGAAATTCAAATAACCCCAC
TAAAAAATGGGGCTCAGAGCTGAACAAAGCATTCTCACCTGAGGAATACC
AAAGGGCTGAGAAGCACTTGAAAAATTTTTCAATGTCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAATGTCAAAACTTCAGGTGGCAGCAGATGTTGGCAAGAATGTGGAG
AAAGAGGAACACTCCTCCATTTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCGGTTCCTCCGAAAATTGGACATAGTACTAC
CGGAGGATCCCTACCATACCTCTCCTGGGCATATACCCCAGAAGATGTTC
CCACCCGGTAAGAAGGACCCATGGCCCCCCTATGTTCCTAGCAAGCCCCA
CTTTATATAGCCCGAN
NCCGATGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTGAAATTCAATCAATATAA
CGAGTAGTTCCTTTAATTAATCAAATGTTACTTTCTAAATTAAATATATA
ATAAAGATCCTTACATTAATAGCACTGGGTATATCTATCAGTATTTCTCA
TCATGTAGAATTCTTTATGAATGTCATATTTTGTAGCTAATTGTACAAAA
ATATACTGCTGTATATTTTCCACAATTTCGTAATATAGAGTTAGTAAATG
AGTGACCAGTAAGGATGTATCTTTAATTAAATATTAATATAAAACAAAAC
TCAAAATCTCTTCTTTACTACATATTTTAAAAGACTATTCAGGATGAATA
TTTCTCATTCAGATAAAAAAGTTGCTAATCTTGTTCTTTTGTCCACAATT
CCAAACAGAACAAAAAATATAGATAATTGTACAAAGAGCCCTGGATCACC
ACAGGAAATTTCAAATATTAATTTCAGAACTGTCCCCTATTTTGATAAAC
AAGCTGCAGAGAAATGGGGTTAGCAAAACATATTCAGGAAAAACTGGCTT
GTTCACTGAGACTATGTTCTATTTGAAAGATCCAGCTCTGACTCATATGA
ACAACTCACATATACTACAGAGAATCCAAGCCACCCCTATCACTAAGTGT
GATGGTTTAGTGTAAAATGTGCTTGTTGGTAAAGAATGAGACCTTGAGTT
TGAATTCCTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h13.g1 MSMg01no388_h13.g1 CHROMAT_FILE:
MSMg01no388_h13.g1 PHD_FILE: MSMg01no388_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:49 2005
         (367 letters)



>mm_chr4_73790089_73790855
          Length = 767

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaatattaatataaaacaaaactcaaaatctcttctttactacatattttaaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 attaaatattaatataaaacaaaactcaaaatctcttctttactacatattttaaaagac 508

                                                                       
Query: 61  tattcaggatgaatatttctcattcagataaaaaagttgctaatcttgttcttttgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tattcaggatgaatatttctcattcagataaaaaagttgctaatcttgttcttttgtcca 448

                                                                       
Query: 121 caattccaaacagaacaaaaaatatagataattgtacaaagagccctggatcaccacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caattccaaacagaacaaaaaatatagataattgtacaaagagccctggatcaccacagg 388

                                                                       
Query: 181 aaatttcaaatattaatttcagaactgtcccctattttgataaacaagctgcagagaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaatttcaaatattaatttcagaactgtcccctattttgataaacaagctgcagagaaat 328

                                                                       
Query: 241 ggggttagcaaaacatattcaggaaaaactggcttgttcactgagactatgttctatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggggttagcaaaacatattcaggaaaaactggcttgttcactgagactatgttctatttg 268

                                                                       
Query: 301 aaagatccagctctgactcatatgaacaactcacatatactacagagaatccaagccacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aaagatccagctctgactcatatgaacaactcacatatactacagagaatccaagccacc 208

                  
Query: 361 cctatca 367
           |||||||
Sbjct: 207 cctatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)