BAC Information

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BAC

Clone NameMSMg01-388N20
Chromosome4 (Build37)
Map Location 88,821,849 - 88,822,369
singlet/doubletsinglet
Overlap geneMtap
Upstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617
Downstream geneLOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388N20.T7 (MSMg01no388_n20.b1)MSMg01-388N20.TJ (MSMg01no388_n20.g1)
ACCAG491257AG491258
length714752
length of high quality
(start - end)		66 (40 - 105)518 (67 - 584)
definitionCHROMAT_FILE: MSMg01no388_n20.b1 PHD_FILE: MSMg01no388_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:17 2005CHROMAT_FILE: MSMg01no388_n20.g1 PHD_FILE: MSMg01no388_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGTGTCCATGGCATATTCCTGGGGCACAGTTTCTACCTGGAGGCAAAAAA
AATGCTCCTTATGTCAGAGTAGGACGCGGGAGGTGAAAACATCTTAGNAA
GTCAATGGGNCAGGNATGCCTTATACACCTAGTAGGTGACCAGAACACAC
NGACCCTATTCATCCCCATAAATAAAAATATGGTCATGGGTCTTCCCAGC
TGATGAAGGGAATGGCCCAAATGACCCAAAGGTATATGCCCAATGGCCCC
CGCAAAACCCCACCCATTGAGGGCACCTGAACCTTGGTGAATTAGGGAAT
TTTTTGGAAAAAGGGCCCCCTTTACCCCCCCCGGGGTTTGTGTTCCCCTT
TCAAAAATTTTCCTTTTATTTTTTAAAGGGCCTTCCCCTTTCCAGGGAAA
AAAAACCGGAAGGGATCCCCCTTTTCCTTTCTTAAAAATCGGGAATTTTT
GGGGAGGAAATATTTTCCCCCCAAAAAAAAATTTTTTTTTTCCCCCCCAA
AACCAAAAAAAACCCCCGCGNCACATGGGGGGCCCCCTCCCCCCCTTTTT
TTTAAAAAAAAAGAAAATACTTTGCTGGGGCCCCCCCCCCCCACTCCCCT
TTCCCCTGCGGGGTTTTTCCTCCTACACAAACAAAAAAANCTCCCCTCCC
ATGCCGGGGGGGCG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTTTTTATAGACCAGGAAGGGTGGTGGTGATA
GCGGTGGCTGCGGCAGTCACTGCTGGTTGACATCTGTGGGCTTTTCAGAA
ATAACATTGGGTTGCTTTAAGGCCTTTCCTCTAAGATGAAGAGCAGTGTT
TGGGCTCAGGGGATTAAATTTGGAGTAAACAGACTTACAACACAGGTTTG
TTTTCATCTGTTCAGGCAGCTATGAGAAAAATCCCATTAGAAGTAGCTTC
TAGACCAAAAAGAAGGCCTTTTTACATTTCAAGGGGTTGAAAACTCTAAG
ATCAAGACTGACTGGCTATATGTCTGGTGAGAACCTATTTTAGTCCTATC
TTCACCAAACCTCACATGACATATAATTCATGTTTTAGTTACTTTTAAAT
TGTTGTGATAAGAACCATGACCAAGACACCTTATAGAAGAAGGAGTTTAC
TAGAGACTCACAGTTCAGAGGGCAGGGCGGATAGGAGCAGGCAGGTAGGC
ATGGCGCTGGAGCAGTATGGCACACCTCCTCCAGCAAGATTACATTTCCT
AATCCTTCCCAACAGTTCCACCAACTAGGGACCAAACATTCCAACAGATA
AGCCTATGGGACCATTCTCATTCAAACCACAACATGAGGGAGCTTGCTGG
ATAACAGACCCCCTTCCTAAAGGAGTGGCCGCCTGGACCATTTAATCACT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_n20.g1 MSMg01no388_n20.g1 CHROMAT_FILE:
MSMg01no388_n20.g1 PHD_FILE: MSMg01no388_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:17 2005
         (518 letters)



>mm_chr4_88821649_88822566
          Length = 918

 Score =  977 bits (505), Expect = 0.0
 Identities = 516/521 (99%), Gaps = 3/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttttatagaccaggaagggtggtggtgatagcggtggctgcggcagtcactgctgg 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acttttttatagaccaggaagggtggtggtgatagcggtggcggcggcagtcactgctgg 260

                                                                       
Query: 61  ttgacatctgtgggcttttcagaaataacattgggttgctttaaggcctttcctctaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacatctgtgggcttttcagaaataacattgggttgctttaaggcctttcctctaaga 320

                                                                       
Query: 121 tgaagagcagtgtttgggctcaggggattaaatttggagtaaacagacttacaacacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagagcagtgtttgggctcaggggattaaatttggagtaaacagacttacaacacagg 380

                                                                       
Query: 181 tttgttttcatctgttcaggcagctatgagaaaaatcccattagaagtagcttctagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttttcatctgttcaggcagctatgagaaaaatcccattagaagtagcttctagacc 440

                                                                       
Query: 241 aaaaagaaggcctt---tttacatttcaaggggttgaaaactctaagatcaagactgact 297
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaagaaggccttgtttttacatttcaaggggttgaaaactctaagatcaagactgact 500

                                                                       
Query: 298 ggctatatgtctggtgagaacctattttagtcctatcttcaccaaacctcacatgacata 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctatatgtctggtgagaacctattttagtcctatcttcaccaaacctcacatgacata 560

                                                                       
Query: 358 taattcatgttttagttacttttaaattgttgtgataagaaccatgaccaagacacctta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattcatgttttagttacttttaaattgttgtgataagaaccatgaccaagacacctta 620

                                                                       
Query: 418 tagaagaaggagtttactagagactcacagttcagagggcagggcggataggagcaggca 477
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaagaaggagtttattagagactcacagttcagagggcagggcggataggagcaggca 680

                                                    
Query: 478 ggtaggcatggcgctggagcagtatggcacacctcctccag 518
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtaggcatggcgctggagcagtatggcacacctcctccag 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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