BAC Information

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BAC

Clone NameMSMg01-388P24
Chromosome4 (Build37)
Map Location 56,279,246 - 56,279,432
singlet/doubletsinglet
Overlap genenone
Upstream geneRad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388P24.T7 (MSMg01no388_p24.b1)MSMg01-388P24.TJ (MSMg01no388_p24.g1)
ACCAG491359AG491360
length776757
length of high quality
(start - end)
192 (43 - 234)339 (70 - 408)
definitionCHROMAT_FILE: MSMg01no388_p24.b1 PHD_FILE: MSMg01no388_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:27 2005CHROMAT_FILE: MSMg01no388_p24.g1 PHD_FILE: MSMg01no388_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:32:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCATGTCCTGCTCCATACTGCCTGGCTCCAAATTCTCAGGGACATCCT
TCCACTCATAATCTCGACTTAGGTGATGTTGATGCCAGTAAGATGCCACG
GCTCACTTAATCTGGCCGTTCTTATTTATAGAATCAGGGTTAGTTTGGGG
CGGGGTTGTTTGTTTTGTTTTGGTTTTTGCTGCNNTTCCCTCCCGTTCTT
TTCTTCTGCACTCCCTCCCCCCCCTCTGCTGGACCACCCTTACTTTGAGC
ACTCCGCGTGCCGCGGTGATTTTTTTTTCCTACCTGACCTCCCCCTTACC
GAAAGTCCCTCTCTCGCCCCCCATCGCCCCGCGCGGCCTTTTCCTTCTAT
TTTTTTTTCCCCCCCCCCCCCCCCCCCCAAAAAATATATGAAAAAATTTG
CTTTCACCCCCCTCCCCACCCCGCCCGCCCTCCCCCCCCTACCCCCTCCC
CCTTTCTCCCCCCCCCCCCCCCTCCTTCTCCTCTCCCCCTCTTTTTCCCC
CTCTCTTCCCCCCCCCCCCTCCCTCTCTTCCTCCTTCTCCTCCCCTTCCT
CCCCTCCTCTTTTCCCCTCCTCTCGCTTCTTCCTTACCACTCTCCCCTCC
CCTCCTCTTCGCCCCTCCTCTTTCTCATTTCTCCCTCCTTTTACCCCCTT
TTCTCCCCTCCCCTCCCCTCTTACCTTCTCTCTTGCCGCCTTCCTCCCCC
CCCTCCTCTCTTACTCCCCTCCCCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGATCTTCCCAAGACTTTTATCATGAAGGG
GTTTTGGATTTTGTTGAATGCTTTCTCAGCATCTAATGAGATGATCATGT
GGTTTTTGTCTTTGAGTTTGTTTATGTAGTGGAATATGTTGACGTATTTC
TGTATACTGAACCATCCTTGCATCCCTGGGATGAAGCCTACTTGATCATG
ATGGATGATCATTTTGATGTGTTCTTGGATTCAGTTTTCGAGAATTTTAT
TGAGTTTATTTGTTTTTTTATTCATAACAGACATTGGTCTGACATTCTCT
TTCTTTTATTTTTTTATTTTTTTTTCCATTTTTTATTAGGTATTTAGCTC
ATTTACACCCGCCACGCTATACCAAAAGTCCCCCATATCCACCCACCCCC
ACTCCCCTGCCCACCCACTCCCCTTTTTTGGCCCTGGGGTTCCCCTGTAC
TTGTGCCTTATAAGGTTTTGCAGCCCCAAGGGCCCCTCTTTTCTTTGTTT
GGCCGAATAAATATTCTGTTGATATAATTGGCCCATATTCCTTACCTCCG
GGTGTTTTTTTTTTTTATTATTTGGCTTCCTCTAATCGACGCGCCGACTT
TTTATTTTCATTTTTTTTTCACAACCCCTTTTTTCTTCCCTTTTTTTTTA
TTCTCTCTTCTCCATTCCTATCTCTCTTTTTTTTTTCTGTTTTTTTCCTT
ATAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_p24.b1 MSMg01no388_p24.b1 CHROMAT_FILE:
MSMg01no388_p24.b1 PHD_FILE: MSMg01no388_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:27 2005
         (192 letters)



>mm_chr4_56279042_56279633
          Length = 592

 Score =  323 bits (167), Expect = 4e-93
 Identities = 182/187 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatgtcctgctccatactgcctggctccaaattctcagggacatccttccact 64
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatgtccagatccatactgcctggctccaaattctcagggacatccttccact 264

                                                                       
Query: 65  cataatctcgacttaggtgatgttgatgccagtaagatgccacggctcacttaatctggc 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 cataatctcgacttaggtgatgttgatgccagtaagatgccacggctcgcttaatctggc 324

                                                                       
Query: 125 cgttcttatttatagaatcagggttagtttggggcggggttgtttgttttgttttggttt 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 cgttcttatttatagactcagggttagtttggggcggggttgtttgttttggtttggttt 384

                  
Query: 185 ttgctgc 191
           |||||||
Sbjct: 385 ttgctgc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)