Query= MSMg01no389_f02.b1 MSMg01no389_f02.b1 CHROMAT_FILE:
MSMg01no389_f02.b1 PHD_FILE: MSMg01no389_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:52 2005
(509 letters)
>mm_chr4_62486958_62487865
Length = 908
Score = 946 bits (489), Expect = 0.0
Identities = 504/509 (99%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 1 aatgaacatccatagcattctgatatcccattgccgccattataaatcaggagtgagagg 60
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 aatgaacatccacagcgttctgatatcccattgccgccattataaatcaggagtgagagg 649
Query: 61 ctatttctgaggcatggcatgagtttgtcacctgccttatttttgccaaaaggagcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctatttctgaggcatggcatgagtttgtcacctgccttatttttgccaaaaggagcctaa 589
Query: 121 taaaacattcctgattgttatttacactgatgttggaacttggagtaaggcaacttagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 taaaacattcctgattgttatttacactgatgttggaacttggagtaaggcaacttagct 529
Query: 181 gggtgggtgctactctcttggctgtggaggtttcccttggccctggcactgtctgttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 528 gggtgggtgctactctcttggctgtggaggtttcccttggccctggcactgtccgttctc 469
Query: 241 atggaaataaaggaccttggtgaagcttcattctgtaccagaatggaaagcatggactat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atggaaataaaggaccttggtgaagcttcattctgtaccagaatggaaagcatggactat 409
Query: 301 cccacccacactcctgcttataaatgcacttgactaagtacactccattcccggtcatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 408 cccacccacactcctgcttataaatgcacttgactaagtacactccattcctggtcatcc 349
Query: 361 ctggccatccctggtcatccttgatcatctctggccagccctgatcatccctagccatcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctggccatccctggtcatccttgatcatctctggccagccctgatcatccctagccatcc 289
Query: 421 atgatcatccctagtcatccctggtcatccctggccatccttgatcatccctggtcatcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgatcatccctagtcatccctggtcatccctggccatccttgatcatccctggtcatcc 229
Query: 481 atcccccaccccccttcatgccaattctc 509
|||||||| ||||||||||||||||||||
Sbjct: 228 atccccca-cccccttcatgccaattctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_f02.g1 MSMg01no389_f02.g1 CHROMAT_FILE:
MSMg01no389_f02.g1 PHD_FILE: MSMg01no389_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:32:53 2005
(508 letters)
>mm_chr4_62302331_62303238
Length = 908
Score = 967 bits (500), Expect = 0.0
Identities = 506/508 (99%)
Strand = Plus / Plus
Query: 1 tgttttggtggggttttgcttcaggagaacttcctgactgcttgcaaagccatgctgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttttggtggggttttgcttcaggagaacttcctgactgcttgcaaagccatgctgtct 260
Query: 61 gtgtgcttggttctccctcccacccccacccgctgccgctctgcctccttgggaactggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgcttggttctccctcccacccccacccgctgccgctctgcctccttgggaactggc 320
Query: 121 cttcccatgggaagttcttcccagtgctcactctctagctctgtcctgcctgctcaagga 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcccgtgggaagttcttcccagtgctcactctctagctctgtcctgcctgctcaagga 380
Query: 181 ctagggtgtctcctgacaggagagcaagggagacaaccaaggagagaacaagacaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggtgtctcctgacaggagagcaagggagacaaccaaggagagaacaagacaaggca 440
Query: 241 gttagaagagcaggcctctcagcttcttggttcctggctctggtattccagatggctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagaagagcaggcctctcagcttcttggttcctggctctggtattccagatggctcct 500
Query: 301 ctgtcctccagtgactctgcccttggcttcccactactttcccaccttgccctgtggtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtcctccagtgactctgcccttggcttcccactactttcccaccttgccctgtggtct 560
Query: 361 cacggatgcttagtatagtcagcctggcttccttgccacgcccccagctcagctgatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacggatgcttagtatagtcagcctggcttccttgccacgcccccagctcagctgatctg 620
Query: 421 ggacccggttaagatgaatgtgtacctagtagtgtggtgctcagtaccatgtactaagtg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ggacccggttaagatgaatgtgtacctagtagtgtggtgctcagtaccatgtactaggtg 680
Query: 481 caccaggacctgagccctgactgttata 508
||||||||||||||||||||||||||||
Sbjct: 681 caccaggacctgagccctgactgttata 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
