Query= MSMg01no389_h16.b1 MSMg01no389_h16.b1 CHROMAT_FILE:
MSMg01no389_h16.b1 PHD_FILE: MSMg01no389_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:06 2005
(456 letters)
>mm_chr4_23671551_23672406
Length = 856
Score = 775 bits (401), Expect = 0.0
Identities = 437/449 (97%)
Strand = Plus / Minus
Query: 8 gaattctgtagattacacaaaatggtttgtttttggtttaagacacaagaattgataaca 67
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaattctgtagaataaacaaaatggtttgtttttggtttaagacacaagaattgataaca 597
Query: 68 tattttaaaataaattttgataattgttcattttgttaataattactcttcaaattatga 127
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tattttaaaataaattttcataattgttcattttgttaataattactcttcaaattatga 537
Query: 128 tggctgaaaattaattttgttgctgaaggctattttagggccttttctttataacattaa 187
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 536 tagctgaaaattaattttgttgctgaaggctattttagggctttttctttataacattaa 477
Query: 188 catccaaatatcaacatcttcaacatgctgcaacatgtttctgaatttgggaataaaata 247
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catccaaataccaacattttcaacatgctgcaacatgtttctgaatttgggaataaaata 417
Query: 248 atattacaaagtatttcagtatcttgatgaatataattagagagatttttacatagatta 307
||||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct: 416 atattacaaagtatttcagtatcttgatgaaaagaattagagaaaattttacatagatta 357
Query: 308 aagaatgagagttttctgttttattttagacctagcctcaaaatgtattaggtgtattca 367
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 356 aagaatgagagttttctgttttattttagacctagcctcaaaatatattaggtgtattca 297
Query: 368 gacagttttcattcactacaatgatgagaaaattagtattatgcttattctccaataagg 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gacagttttcattcactacaatgatgagaaaattagtattatgcttattctccaataagg 237
Query: 428 tatgattatttctggtagaactgcatagt 456
|||||||||||||||||||||||||||||
Sbjct: 236 tatgattatttctggtagaactgcatagt 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_h16.g1 MSMg01no389_h16.g1 CHROMAT_FILE:
MSMg01no389_h16.g1 PHD_FILE: MSMg01no389_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:06 2005
(557 letters)
>mm_chr4_23528221_23529178
Length = 958
Score = 994 bits (514), Expect = 0.0
Identities = 547/558 (98%), Gaps = 1/558 (0%)
Strand = Plus / Plus
Query: 1 cagactgaatccgaatatattttcccctaaaactcaatttagaacgaaggaaatctcagt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactgaatccgaatatatttttccctaaaactcaatttagaacgaaggaaatctcagt 260
Query: 61 ttagaaaattgaggaaagcaacttcccatgtgtgtgcctgaaaacatttaaccccatgtt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ttagaaaattgaggaaagcaacttcccatgtgtgtgcctgaaaatatttaaccccatgtt 320
Query: 121 cagcagaggtaacaagggaatgctgagggctagaaacaccacaaagcatgctctgttaca 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cagcagaggtaacaagggaatgctgagagctagaaacaccacaaagcatgctctgttaca 380
Query: 181 taggaccccttcttaattccagacagttttatggttcaagaataaaacaaagaacacgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggaccccttcttaattccagacagttttatggttcaagaataaaacaaagaacacgcg 440
Query: 241 aacaatcttatattaatgcaggaaaggcggctcttccccagacgttctgctgttttatcc 300
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaagcggagattaatgcaggaaaggcggctcttccccagacgttctgctgttttatcc 500
Query: 301 cactgtctggaaaaaa-tgaatagagggtcccgaaactatccgtggttttgcatatctct 359
|||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 501 cactgtctggaaaaaaatgaatagagggtcccgaaactaacggtggttttgcatatctct 560
Query: 360 tcattaggaagtgtatttgtaaaacaagctccaaattcttgctcttcacaattcctggcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattaggaagtgtatttgtaaaacaagctccaaattcttgctcttcacaattcctggcc 620
Query: 420 gcggggtaatattcttcagtgccacagttttcaatgcatatgagtcagaggatcatttct 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagggtaatattcttcagtgccacagttttcaatgcatatgagtcagaggatcatttct 680
Query: 480 tacccggagcacaggacagagctaagacacagctgaaaccagccctcccacaggctcccc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacccggagcacaggacagagctaagacacagctgaaaccagccctcccacaggctcccc 740
Query: 540 tccaacaacagcagcggc 557
||||||||||||||||||
Sbjct: 741 tccaacaacagcagcggc 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
