BAC Information

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BAC

Clone NameMSMg01-389J03
Chromosome4 (Build37)
Map Location 106,013,689 - 106,190,562
singlet/doubletdoublet
Overlap geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61
Upstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneDhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389J03.T7 (MSMg01no389_j03.b1)MSMg01-389J03.TJ (MSMg01no389_j03.g1)
ACCAG491793AG491794
length741744
length of high quality
(start - end)		415 (87 - 501)531 (78 - 608)
definitionCHROMAT_FILE: MSMg01no389_j03.b1 PHD_FILE: MSMg01no389_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:13 2005CHROMAT_FILE: MSMg01no389_j03.g1 PHD_FILE: MSMg01no389_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,190,148 - 106,190,562)(106,013,689 - 106,014,219)
sequence
CCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGGAATTGTCTGGGGCCATCAGAGATGACCAGTCAT
GGGTCTTATGGGGAAGGTTCTGTCCCTTTTTAGTTCCAGAAATCTGAGAT
GTCTGAATCAACTAATGCAACAGGAATCTTGAGGTTTCCAGAAACTTCTA
GTCACCCATACAGGCTCACACTCCATTCATGTAAGTTAACGAGCAGCCCC
TACACGCACAGGAGCGTCTTCTGTGGAACAGGAGAGCTTGTCTAACAGCC
GAAATCCTCCGTCTCAGAGTGTTCCCAGCTCAGGAAGGGAGTGATGGTCC
TGGAGGTACTTTGTGTCTACCTGAAGGCAGGAGGGCATAGAGGTTCTGTG
TGAGTGGATTTGGGTTTAAACTTGGTCTGTCTAGATGATCCTGAGTAGCT
GTTTTGATTTCTTAGTCCCCAACTACTTGAGTATACAGCTAACTATATAA
TCCCGCCTATGCCTACCCCGGTCCTATACCCCAGAGAAATGAAAACGGGG
TTATGAAAACCTTGGACACGAACGTCCGCCCCAGTGTTGGCGCACACCAA
AAGGTAGAGGCAATGCAATGTTCATCCGCCTGTGAGGCGACCTGTGCCTT
CCTATGCCCCTGACCACGCCATGCGCCCCCTCCTGCCCCCCTCACATGCT
GCCACCTGACTGCCCCTCCCTCCACCTTCCCCCCTGCACCT

NNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACACTATTGGTATACATAACTAC
CGTTGATTAAGTATCTGCTCTGTGTTAAATTCTGAGTACTGGGGGCGGGG
GTCACTAATTGGAGTGCTGCTTTTTTTTTTAATGCTCATCTCTCTTTTTC
ATCTCAGAAGAACGATGAAAATGGAAATTGCTCAGGAGAAGGAATTGAAT
TTCCTACAACCAATTTGTATGAGCTGGAAAGCCGCGTTTTGACTGATCAT
TGGTCTATCCCGTACAAGAGAGAAGAGTCATTAGGCAAATGCCTGTTGGC
TTCCACCTACTTAGCCAGACTTGGTAAGCAAGCTTCCATGCCTCAGGTGG
TGGTTGCGGGGCATGGTTTCATGTAGGTCAAAGGCAAATCATTGTCTGTG
ATTTTGGTCACACCATTTATTTTCTCAGTCTTTGTCATTCCCTGTGGGAT
GATAAAAGCTTTGACTAAATCAGCTGTTTTCCTTTCTAGTAGAGCATAAG
ATTACTTATAATATAATTGAAGAGCTTTGTTAGAGACAAAAATTAACTTT
TCCCCTAGCAGCTTANAGCACTTCATATTTGGACTCAATTTCAAGCTTTT
CAGAATAGGAAGAGTTTGGCAGTACCCTTCCCTAACTTCTATGAAACCAG
GGCCGTGAGAGCGAAAGGAAGGGTGATGGGAACGGTAAAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_j03.b1 MSMg01no389_j03.b1 CHROMAT_FILE:
MSMg01no389_j03.b1 PHD_FILE: MSMg01no389_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:13 2005
         (415 letters)



>mm_chr4_106189948_106190762
          Length = 815

 Score =  772 bits (399), Expect = 0.0
 Identities = 411/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgaccagtcatgggtcttatggggaaggttctgtccctttttagttccagaaatctg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 615 agatgaccagtcatgggtcttatggggaagggtctgtccctttttagttccagaaatctg 556

                                                                       
Query: 61  agatgtctgaatcaactaatgcaacaggaatcttgaggtttccagaaacttctagtcacc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 555 agatgtctgaatcaactaatgcaacaggaatcttgagatttccagaaacttctagtcacc 496

                                                                       
Query: 121 catacaggctcacactccattcatgtaagttaacgagcagcccctacacgcacaggagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 catacaggctcacactccattcatgtaagttaacgagcagcccctacacgcacaggagcg 436

                                                                       
Query: 181 tcttctgtggaacaggagagcttgtctaacagccgaaatcctccgtctcagagtgttccc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 435 tcttctgtggaacaggagagcttgtctaccagccgaaatcctccgtctcagagtgttccc 376

                                                                       
Query: 241 agctcaggaagggagtgatggtcctggaggtactttgtgtctacctgaaggcaggagggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agctcaggaagggagtgatggtcctggaggtactttgtgtctacctgaaggcaggagggc 316

                                                                       
Query: 301 atagaggttctgtgtgagtggatttgggtttaaacttggtctgtctagatgatcctgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atagaggttctgtgtgagtggatttgggtttaaacttggtctgtctagatgatcctgagt 256

                                                                  
Query: 361 agctgttttgatttcttagtccccaactacttgagtatacagctaactatataat 415
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 255 agctgttttgatttcttagtccccaactagttgagtatacagctaactatataat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no389_j03.g1 MSMg01no389_j03.g1 CHROMAT_FILE:
MSMg01no389_j03.g1 PHD_FILE: MSMg01no389_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:13 2005
         (531 letters)



>mm_chr4_106013489_106014419
          Length = 931

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactattggtatacataactaccgttgattaagtatctgctctgtgttaaattctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactattggtatacataactaccgttgattaagtatctgctctgtgttaaattctgagt 260

                                                                       
Query: 61  actgggggcgggggtcactaattggagtgctgcttttttttttaatgctcatctctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggggcgggggtcactaattggagtgctgcttttttttttaatgctcatctctcttt 320

                                                                       
Query: 121 ttcatctcagaagaacgatgaaaatggaaattgctcaggagaaggaattgaatttcctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatctcagaagaacgatgaaaatggaaattgctcaggagaaggaattgaatttcctac 380

                                                                       
Query: 181 aaccaatttgtatgagctggaaagccgcgttttgactgatcattggtctatcccgtacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaatttgtatgagctggaaagccgcgttttgactgatcattggtctatcccgtacaa 440

                                                                       
Query: 241 gagagaagagtcattaggcaaatgcctgttggcttccacctacttagccagacttggtaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gagagaagagtcattaggcaaatgcctgctggcttccacctacttagccagacttggtaa 500

                                                                       
Query: 301 gcaagcttccatgcctcaggtggtggttgcggggcatggtttcatgtaggtcaaaggcaa 360
           |||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagcttccacacctcaggtgttggttgcggggcatggtttcatgtaggtcaaaggcaa 560

                                                                       
Query: 361 atcattgtctgtgattttggtcacaccatttattttctcagtctttgtcattccctgtgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcattgtctgtgattttggtcacaccatttattttctcagtctttgtcattccctgtgg 620

                                                                       
Query: 421 gatgataaaagctttgactaaatcagctgttttcctttctagtagagcataagattactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgataaaagctttgactaaatcagctgttttcctttctagtagagcataagattactt 680

                                                              
Query: 481 ataatataattgaagagctttgttagagacaaaaattaacttttcccctag 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataatataattgaagagctttgttagagacaaaaattaacttttcccctag 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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