Query= MSMg01no389_j22.b1 MSMg01no389_j22.b1 CHROMAT_FILE:
MSMg01no389_j22.b1 PHD_FILE: MSMg01no389_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:17 2005
(344 letters)
>mm_chr4_125188164_125188907
Length = 744
Score = 630 bits (326), Expect = 0.0
Identities = 335/338 (99%)
Strand = Plus / Plus
Query: 7 tgtgtgtacctaatttttttaatctatatgtgccccctcacagattgaattttaagttgc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tgtgtgtacctaatttttttaatctatatgtgccccctcacagattgaattttaagttgc 266
Query: 67 attaaactgttatacatttatttaatttttagtaaactgaccttcagacattggaccgtg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attaaactgttatacatttatttaatttttagtaaactgaccttcagacattggaccgtg 326
Query: 127 tccgtatagtttgggtgccccccttctttctgcacattctcacgccccacagcctctctt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tccgtatagtttgggtgccccccttctttctgcacattctcacgccccacagcctctctt 386
Query: 187 gctttctaatcacccctcatgacaggatgccctgtgtcctgcttcaagctggcttttagt 246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctttctaatcactcctcatgacaggatgccctgtgtcctgcttcaagctggcttttagt 446
Query: 247 ggagttcatgtagaaatggcagagacaggactgttcttcctgtcttccctctctgactta 306
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggagttcagggagaaatggcagagacaggactgttcttcctgtcttccctctctgactta 506
Query: 307 tcccgcttctgtttggctgactcgacctcccccgggga 344
||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tcccgcttctgtttggctgactcgacctcccccgggga 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no389_j22.g1 MSMg01no389_j22.g1 CHROMAT_FILE:
MSMg01no389_j22.g1 PHD_FILE: MSMg01no389_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:17 2005
(476 letters)
>mm_chr4_125377514_125378390
Length = 877
Score = 891 bits (461), Expect = 0.0
Identities = 473/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 1 caccttccagttccagggttccaaactcacagccttctttatgttttgtcttgtttttgg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 caccttccagttgcagggttccaaactcacagccttctttatgttttgtcttgtttttgg 618
Query: 61 ctttttgtctgtcacaggagatctgcaacctgctttccttggatgtcccttactgttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctttttgtctgtcacaggagatctgcaacctgctttccttggatgtcccttactgttctt 558
Query: 121 gacctagaccttgggccccattgtcaaaaccccacccacagtctcctcaaacagttcagt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 gacctagaccttgggccccattgtcaaaaccccgcccacagtctcctcaaacagttcagt 498
Query: 181 gattctggaacacaaccctgaaccccctgacacagaaagaagcaaagtcccccctcatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gattctggaacacaaccctgaaccccctgacacagaaagaagcaaagtcccccctcatct 438
Query: 241 ccgtggggcccctcaccattgctgtcacctccttggggagtggagtcccacataccaatg 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccgtgggccccctcaccattgctgtcacctccttggggagtggagtcccacataccaatg 378
Query: 301 gctccggactcatctgtctgtcctggctctggtgggagccttaataaggatgactgcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctccggactcatctgtctgtcctggctctggtgggagccttaataaggatgactgcaga 318
Query: 361 gccagtcacctaaatcaattaatggaatcgtttggagcagccagcacagggcgatctgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gccagtcacctaaatcaattaatggaatcgtttggagcagccagcacagggcgatctgcc 258
Query: 421 aggaggacgatgcttc-tttttttttaacaggaaaaattggcaagaaaggaagttcc 476
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aggaggacgatgcttcttttttttttaacaggaaaaattggcaagaaaggaagttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space: 404022
Effective search space used: 404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
