BAC Information

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BAC

Clone NameMSMg01-389L01
Chromosome4 (Build37)
Map Location 66,428,824 - 66,429,029
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499
Downstream geneTlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389L01.T7 (MSMg01no389_l01.b1)MSMg01-389L01.TJ (MSMg01no389_l01.g1)
ACCAG491885AG491886
length761763
length of high quality
(start - end)
208 (85 - 292)509 (83 - 591)
definitionCHROMAT_FILE: MSMg01no389_l01.b1 PHD_FILE: MSMg01no389_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:23 2005CHROMAT_FILE: MSMg01no389_l01.g1 PHD_FILE: MSMg01no389_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTCTTATTACCTGACCCACAGCCTAGGTAACGTCACCAG
TCCCTGATTTACATGTTTAAACAAATTATAGCATGTTTACCTGAGAGAAA
CCAACATGTGATTCATAATTTGACTCCTGGGCATTTTCAATGCACATGTA
TTCTCTGACCATACTACTTTCTTAATAAAACATGCTTTGTTTACACTTCG
CATCATGATGGACTTGCATACTTACTGAGTGCATATTCACATTACCCATC
TTAGTGTAAATGGCAATGATTGCAACGCTGATCTATCTTACTACTCAGGA
CCTCCAGAGTCACTAGCATAACAAGTCATAATAATACTAACTAGAATTCT
CTGAAAAATTGAAAAGATGGAATGAGCGTATATTACAGAAATGATCTCTT
TGACTACGTTATACTGTTTGCCTTACATGGCCTTAACCATGCCTGTTTGT
GTGTCATACAGGCTAATAACTCCGTACCTACTCAGCCCTATCACTCCACC
TCTCCGCCGACGCACGATCGGAGGACTCTCGCATACCCCCTGTTTTTTCC
CCTCCCTCGATCGTTACTCTCACCCTATCCTGCCCTACTCCCATTCCCTC
ACTCTTTCCCCGCCCAACCCCCTCTCTCCTTGTCTTCCCACCCCCTCCCC
TCTTTCCTCCCGTTCCCCCCTTCTTTTCTCCCCCTCCCTTCCACCTTCCC
CCTTTCTCTTN
NCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACACAAGGAATACCGA
ATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGGGAGGATGTGGAGAA
AGAGGAACACTCCTCCACTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTTAGAAAATTGTACATAGTACTACAAG
AGGATCCAGCAATACCTCTTCTGAGCATATATCCATAAGATGACCCAACC
AGTATGAAGGACACATGCTCCACTATGTTCATAGAAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTACAAAG
AATGAATTTATGAAATTCCGAGGCAAATGGATGGACCTGGAGGGCCTCAC
CCTGAGTGAGGCAACCCAATCACAAAGGAACTCTTACAATATGTAACTCC
CTGGAAACGCGTAAACTATGTCCTAAACTTTAGTAGACCCCTAGATATTA
TGATAAAAATTTGGTCAAAGGCACGGAAATTCCTATAACAAATGGACAAA
CCACGGCCCGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_l01.b1 MSMg01no389_l01.b1 CHROMAT_FILE:
MSMg01no389_l01.b1 PHD_FILE: MSMg01no389_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:23 2005
         (208 letters)



>mm_chr4_66428624_66429231
          Length = 608

 Score =  368 bits (190), Expect = e-106
 Identities = 202/206 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggtaacgtcaccagtccctgatttacatgtttaaacaaattatagcatgtttacctga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtaacgtcaccagcccctgatttacatgtttaaacaaattatagcatgtttacctga 260

                                                                       
Query: 61  gagaaaccaacatgtgattcataatttgactcctgggcattttcaatgcacatgtattct 120
           |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gagaaaccaaaatgtgattcataatttgactcctgggtattttcaatgcacatgtattct 320

                                                                       
Query: 121 ctgaccatactactttcttaataaaacatgctttgtttacacttcgcatcatgatggact 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ctgaccatactactttcttaataaaacatgctttgtttacacttcgtatcatgatggact 380

                                     
Query: 181 tgcatacttactgagtgcatattcac 206
           ||||||||||||||||||||||||||
Sbjct: 381 tgcatacttactgagtgcatattcac 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)