BAC Information

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BAC

Clone NameMSMg01-389M21
Chromosome4 (Build37)
Map Location 68,230,691 - 68,231,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433715, Tcp1-ps1
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389M21.T7 (MSMg01no389_m21.b1)MSMg01-389M21.TJ (MSMg01no389_m21.g1)
ACCAG491972AG491973
length773765
length of high quality
(start - end)
388 (74 - 461)491 (83 - 573)
definitionCHROMAT_FILE: MSMg01no389_m21.b1 PHD_FILE: MSMg01no389_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:31 2005CHROMAT_FILE: MSMg01no389_m21.g1 PHD_FILE: MSMg01no389_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGCTGTGTACCTAGATTGGGAAGATCTACTGCTACTCTACC
ATCTTCCACATCTATGAGACCCCTTAGAACTTGTTGTTTCTCCAGGGCAT
CTGCTTCTGCTCTGCTTTTCTTATTCTTCCTCCTCCTCTGCATCCTCTCC
CTCTTCCATTTCTCCTTCTCTCTCGCCACCTTTTGCTCCACCTTCAATTT
TATCTGTCCAATCATCACTTCTCCTTTATTTTACAAATTAAGGTGGGAAG
GAGGGTTACAGGAAATCACCTGAGTACTGATTCATTCCTTTTTCAAAGCC
ACTCAGAACAAAATAGAATTAACATCAAATATAATTAGCCCCACAGCTAC
CCACAACACTTAGCTTATTCATTTACACCTAACTTAGGTCCCAGTGAGAC
AACTTGTCTCAAATACAAAGTTGATAATTACTATGGAATACCATCCCTTT
CTTGAGCTGTGAGATACATGTGTGTGTTCACACAAATGTACACATACACT
CAAATATAGAGGCATCAAAAATAAAAATGAAACTTTACCAAAAATATCCT
CTCATTACCATGATTTTCTTAAAAAAAAATAAAAATTTCCTTCTTGGACA
TTTTTGAATTGCCGAATAATTGAGTTTTTTACGAAAATTTTACCCCTCCT
TTTCCCCTTCGCCCGCCGGGCAAAATTCGGACCCCCTTCTCCCCCACTTT
GCGAATTATACAACACACTTTTA
NNNNTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTAGGTAGTTTTTACT
AAGAGAAACAGAATGATCAGACCTTCTGGCTCAAACCTGTAATTATAGCT
ACTGAAAAGTTAAACATTAGAATTATAAGTTTAGGATATTCCTGGGCTAC
AGAGAAAATTCAGACAGTATGGGCAACTTACATATTTCTTCAAATAGGGC
ATTCAGAAGAGCAAAGGATGTAATTAAGTGGTTGGGTGCTTCCTTGCATG
CATGAAGATCTGTAAGAACACAAGAAATAAAGCAAAACAAAAACACATAC
ATTTGAAAACACACATGCGTACAGCATATTCACACAGTCACATGTAATAA
ACACATCTACATACTTACAAATGTTCATTATATATATATATATATATATA
CATACATAAAATTATGCACATAACCCCCATAGACACATGCTCACTTATGC
TTCACACACACACACACACACACACACACACATACACACACTTGTGAAAA
AAACTTATAACCAATATCTACNAGCCTACACACTTTCATGTTTATGTACA
TTTATGTACACATACCTACACTTACACNTGCCTACCCTTAGTAACATACA
AAACACTAAGCATGCTTTCTACAAGGCTACTTTTACCTCCCCCCATATAT
ATGGATATTGTGGGGGGGGGAAAAAAAAAGGGGGGGGGGGGGGAAAAGNN
CNCCTTTTCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_m21.g1 MSMg01no389_m21.g1 CHROMAT_FILE:
MSMg01no389_m21.g1 PHD_FILE: MSMg01no389_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:31 2005
         (491 letters)



>mm_chr4_68230644_68231534
          Length = 891

 Score =  841 bits (435), Expect = 0.0
 Identities = 477/507 (94%), Gaps = 26/507 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaggtagtttttactaagagaaacagaatgatcagaccttctggctcaaacctgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atttaggtagtttttactaagagaaacagaatgatcagaccttctggctcaaacctgtaa 487

                                                                       
Query: 61  ttatagctactgaaaagttaaacattagaattataagtttaggatattcctgggctacag 120
           ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 486 ttacagctactgaaaagttaaacactagaattataagtttaggatattcctgggctacag 427

                                                                       
Query: 121 agaaaattcagacagtatgggcaacttacatatttcttcaaatagggcattcagaagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agaaaattcagacagtatgggcaacttacatatttcttcaaatagggcattcagaagagc 367

                                                                       
Query: 181 aaaggatgtaattaagtggttgggtgcttccttgcatgcatgaagatctgtaagaacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaaggatgtaattaagtggttgggtgcttccttgcatgcatgaagatctgtaagaacaca 307

                                                                       
Query: 241 agaaataaagcaaaacaaaaacacatacatttgaaaacacacatgcgtacagcatattca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaaataaagcaaaacaaaaacacatacatttgaaaacacacatgcgtacagcatattca 247

                                                                       
Query: 301 cacagtcacatgtaataaacacatctacatacttacaaatgttcat-------------- 346
           ||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct: 246 cacagtcacatgtaataaacacatctacatacttacaaatgttcatactatatatatata 187

                                                                       
Query: 347 ----tatatatatatatatatatatacatacataaaattatgcacataacccccatagac 402
               |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 186 tatatatatatatatatatatatatatatatataaaattatgcacataacccccatagac 127

                                                                       
Query: 403 acatgctcacttatgcttcacacacacacacacacacacacacacacatacacacacttg 462
           ||||||||||||||||||||||||||||||||||||||||||||||||        ||||
Sbjct: 126 acatgctcacttatgcttcacacacacacacacacacacacacacaca--------cttg 75

                                      
Query: 463 tgaaaaaaacttataaccaatatctac 489
           |||||||||||||||||||||||||||
Sbjct: 74  tgaaaaaaacttataaccaatatctac 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)