BAC Information

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BAC

Clone NameMSMg01-389O06
Chromosome4 (Build37)
Map Location 109,574,741 - 109,575,213
singlet/doubletsinglet
Overlap geneFaf1
Upstream geneRab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-389O06.T7 (MSMg01no389_o06.b1)MSMg01-389O06.TJ (MSMg01no389_o06.g1)
ACCAG492037AG492038
length796756
length of high quality
(start - end)
83 (234 - 316)474 (80 - 553)
definitionCHROMAT_FILE: MSMg01no389_o06.b1 PHD_FILE: MSMg01no389_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:38 2005CHROMAT_FILE: MSMg01no389_o06.g1 PHD_FILE: MSMg01no389_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGNGGAATTCTTGTTATACCCGTATCAAATAAGGTTAATGGATGAATGCA
TGAATAAATGGCCTAAAGGAAGGGTCCATTTTATTTAATCATACCATATA
AGTTTTGATAGGGAAGATTTGATGGAGAATCATTGGGTAGTAGATTGACA
AAAGTAGAATAATGATTTGATCGAGTGCTAAGAATATTTTTCTAGCCCAC
AAAGTAATAAAAGATAAAAGGTAAATATAAATTTCCTGTGCATATGTGTA
TGCACTTTGTTTGCATGCTCATGTTGTTTATAGAACACATCACTTTCACA
AAGGTGCCCCACATTTCATACAACCTTTCAGATTTTCATGTGCCCTGCTA
GGTTGCAACCCCCTTGCAACTGCGCATTGTGTTCGTCTTCCAATCCTGCA
CCTTAACCCGCCCAACACGTTCGCGCGCTCTCCCGCCCGCCTCCTCCCCT
TTCCTCCCTCCCTACCCTCCATCCCCCCCTACCGGCCCCCTCCCCCTTCC
CCCTCTTCCCTTCCCCCCTCCTCCCTTCTCCCCCCTCCTCTTCTCCTCAC
CGCCTTCCATCCCTGATCGCTCCTCTTCCTCTCCTCTCCCTTCTTCCCTC
TTTTCCTTGCTCCCCCCTCCCTCCTTTTCCCCCCTTTCCCCTCTCCTCTT
CCCCCTTTTCTCTCCCTTCCTCCCTCCCCCTCCCTTCCCTTCTCCCCCCT
CTCTCTCTTCTCCTCCCTTTCTCTCCCCCCTTCCTTCCCCTTCTTC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACATCCAGGCCACCAGGTCTAGTGAG
ACTGTCTCAAAAAAGAGAGCAAAGTTTGTAGAAGTAAAGCTAAAAGGAAA
AACTGTACAGTAAGGCTACCGAGTGTCTTGTTTGACTTGTTTACCACACA
TATTCTTAGGTTTTGATAAATTCACATCTTCTTTTTATTTTTTCTCATTT
TCCCAAAATTCAATCTTCTCTCAGTTTACCCATGCTGTGCCTGTTCTTGA
AATGAATCAAATGTGCCTCTTTAGATTATTTTCCCCTGACTACAATGATT
ACTTATTTATTTGCTTGTTTGGTTTTTGAAACAGGCTTGTTTGTTTTGTG
GCTCAGGCTGCCTACAAGTTCAGGATTCTTCTGCCCTGCTTCCTGGGTGC
TGGGATTACAGGCATTTCTGCCCCTAAATTCCTTCCTATAAACATGGTCA
TACAGTGCCATAAAGAATTCTTGGGGGATAGGAATATCCCCAAAATAAAA
TACAATAAAGTAAAGTAAAATAAAATGTTCGGGTAAGTGCACAATATTTA
AGAAAAGAACCAATTTTGTAATCCTTTTAATTGATATATGCATGAGAAAA
AATGTTTTCATTATTTTTTCTCTTAAGGCGCCCTCCGGCCTTGACATTGT
GAAACACGCAAAAACTTCGATTCTTTCCACACCGTTTGAACTACACTGTT
CTCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no389_o06.g1 MSMg01no389_o06.g1 CHROMAT_FILE:
MSMg01no389_o06.g1 PHD_FILE: MSMg01no389_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:38 2005
         (474 letters)



>mm_chr4_109574729_109575602
          Length = 874

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/474 (98%), Gaps = 2/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccaccaggtctagtgagactgtctcaaaaaagagagcaaagtttgtagaagtaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caggccaccaggtctagtgagactgtctcaaaaaagagagcaaagtttgtagaagtaaag 426

                                                                       
Query: 61  ctaaaaggaaaaactgtacagtaaggctaccgagtgtcttgtttgacttgtttaccacac 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctaaaaggaaaaactgtacagtgaggctaccgagtgtcttgtttgacttgtttaccacac 366

                                                                       
Query: 121 atattcttaggttttgataaattcacatcttctttttattttttctcattttcccaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atattcttaggttttgataaattcacatcttctttttattttttctcattttcccaaaat 306

                                                                       
Query: 181 tcaatcttctctcagtttacccatgctgtgcctgttcttgaaatgaatcaaatgtgcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcaatcttctctcagtttacccatgctgtgcctgttcttgaaatgaatcaaatgtgcctc 246

                                                                       
Query: 241 tttagattattttcc-cctgactacaatgattacttatttatttgcttgtttggtttttg 299
           ||||||  | ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 245 tttaga-caatttcctcctgactacaatgattatttatttatttgcttgtttggtttttg 187

                                                                       
Query: 300 aaacaggcttgtttgttttgtggctcaggctgcctacaagttcaggattcttctgccctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 aaacaggcttgtttgttttgtggctcaggctgcctacaagttcaggattcttctgccctg 127

                                                                       
Query: 360 cttcctgggtgctgggattacaggcatttctgcccctaaattccttcctataaacatggt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cttcctgggtgctgggattacaggcatttctgcccctaaattccttcctataaacatggt 67

                                                                 
Query: 420 catacagtgccataaagaattcttgggggataggaatatccccaaaataaaata 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  catacagtgccataaagaattcttgggggataggaatatccccaaaataaaata 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)