Query= MSMg01no390_c09.b1 MSMg01no390_c09.b1 CHROMAT_FILE:
MSMg01no390_c09.b1 PHD_FILE: MSMg01no390_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:58 2005
(437 letters)
>mm_chr4_118949298_118950134
Length = 837
Score = 716 bits (370), Expect = 0.0
Identities = 405/422 (95%), Gaps = 10/422 (2%)
Strand = Plus / Minus
Query: 17 agacagtattggttaaaacctaatgttgggggccgggtgtggtggcgcacgcctttaatc 76
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 agacagtgttggttaaaacctaatgttgggggccgggtgtggtggcgcacgcctttaatc 778
Query: 77 ccagcactcgggaggtagaggcaggcggatttctaaattcgaggccagcctggtctacag 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ccagcactcgggaggtagaggcaggcggatttctaaattcgaggccagcctggtctacag 718
Query: 137 agtgagttccaggacagccagagctacacagagaaaccctgtctcaaaaaa-aaaaaaca 195
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 717 agtgagttccaggacagccagagctacacagagaaaccctgtctcaaaaaataaataa-- 660
Query: 196 aacaaacaaaaataaataaataaataaaacctaatgttgattgtgtttaatatttttatg 255
| |||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct: 659 -------ataaataaataaataaataaaacctattgttgattgtgtttaatatgctaatg 607
Query: 256 aattttctaggtacaaccatgaatatacgtgcatagaccctctttcaggtcattttacat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aattttctaggtacaaccatgaatatacgtgcatagaccctctttcaggtcattttacat 547
Query: 316 taaaatagtaacagctgagtcacctgagaaacatagaatctggtagtttcttagtcctta 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taaaatagtaacagctgagtcacctgagaaacatagaatctggtagtttcttagtcctta 487
Query: 376 aagctaggtgcctcagcattccagccaagaacctggaagtttcctggagagctctatgtc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aagctaggtgcctcagcattccagccaagaacctggaagtttcctggagagctctatgtc 427
Query: 436 tt 437
||
Sbjct: 426 tt 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_c09.g1 MSMg01no390_c09.g1 CHROMAT_FILE:
MSMg01no390_c09.g1 PHD_FILE: MSMg01no390_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:58 2005
(283 letters)
>mm_chr4_118761795_118762477
Length = 683
Score = 455 bits (235), Expect = e-132
Identities = 271/283 (95%)
Strand = Plus / Plus
Query: 1 cttgctttccttcctcatgttggtcactgttcatcattgcctaagcacagttgtctggac 60
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 201 cttgctttccttccttatgttggtcactgtttatcattgcctaagcagagttgtctggac 260
Query: 61 tgccactcctttggtctattttggtttttttagactggttcagttagtgtatgcctagtc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 261 tgccactcctttggtctattttggtttttttagactgtttcagttagtgtacacctagtc 320
Query: 121 tcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tcaatgccttcctgagcagaagttcatggccctgtcattgacactgggattagttgagaa 380
Query: 181 gtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttggggttggctctgagctggagctatgagattttctgtctgtcgtctgtctgtctg 440
Query: 241 tctttttgtttgttctcatccttctcaacagttggaacactta 283
|| ||| |||||||||||||||||||||||||||||||||
Sbjct: 441 cctacctgtctgttctcatccttctcaacagttggaacactta 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
