BAC Information

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BAC

Clone NameMSMg01-390M17
Chromosome4 (Build37)
Map Location 11,283,741 - 11,424,433
singlet/doubletdoublet
Overlap geneRbm35a, LOC634834, 1110037F02Rik
Upstream geneLOC666840, 1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4
Downstream geneLOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390M17.T7 (MSMg01no390_m17.b1)MSMg01-390M17.TJ (MSMg01no390_m17.g1)
ACCAG492720AG492721
length745746
length of high quality
(start - end)
534 (103 - 636)289 (336 - 624)
definitionCHROMAT_FILE: MSMg01no390_m17.b1 PHD_FILE: MSMg01no390_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:49 2005CHROMAT_FILE: MSMg01no390_m17.g1 PHD_FILE: MSMg01no390_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,283,741 - 11,284,274)(11,424,145 - 11,424,433)
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGGGATTAACGGATTAAGCCCCACCACTCTACAAACA
ATACTTTATTAAACAAGTTAATTGATATAGATCCCACTTTGCTTCAAAAT
AAAATTCAGTGCCTAGAACTGCCGATTTTAATAGAACCAAGCAAATCAAC
CCATTGAAACTTCATGAAAAAGGTTCATATTTTAGCGCCAGCTTTCCAAA
TGCTCCACACTTATTAACTAGAACTCGGCTTCTAGACTACGGGGCTTATT
CCTCTCGGACAGGATTCCACATGGCTTGCTTCCAGCTGCCAATGAGCAAG
AGCACAGCTTGCAATTAAGCACTGATCCTGCGATCCAACCAAACAGTGGC
TGAACCAATTACACATTTATACACAACGGAGACTACCACCCTGCTCACCC
CAGATAGCCTGAATAGGATAGCGACCGGAATGCTCTCCAGGCTACCGCTT
TTAGGACACAGTTGATGCTCAAAAAAAAGTTAAGAATACAAAATGGACAT
CAAATCATCCTCCTTGAGAGTTTAACATGTAAAAGAGAATGAATAAATAA
AAAATAAATAANAGACAGAAAGGAAAGGAGCCAGGCAGATGTTGCGTTTT
ACCTCGGNATCTACATAGCCAGGTTGCCTCCCAGAGTCAGTGCTTATCCG
GAGCACACTAAGCTTCAGACCCCCGTGCTTATCCGCGGAAAAGCA
NNNAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTTTACCTATGTATTTC
TAAGTCTTATTGTGAGGGGAAAAAATTATAAAGTACTTTTGAGTTTAAGA
TCCCAGGCTTCCAGCAGGTGGTGCTGTACACCAGACTTGGGTCTCTGAGT
CTGAGGCCAGCCTGGTCCACAGAACAAGTTCCAGGAGACACAGGGCTACA
CAGAGAAACTGTCTCAAAACAGCAAAACAAAAACAAAAACGAATAGACAT
CAAGCTTCATGGCATCAAGATGGTTCATCTTTTTAAGACAGCTGCCAAGG
CAGATGCTCGACCTCAATTCCTGGGGACCCACATGGTGGCAGAAGAGAAC
TGATTCATTCCTACAAGGTGTCCTGACCTCCACCCATGACTCCATGACAC
ATGAAGGACCACACATCACACATAAACTTAAATATGTAATAAAAATTGGT
AAAAAGATTCCCTGCAGGTTTCTTGTTGTTTGTTTTACTCCATTAATCCT
TAATTTGATTGTTCTACATGTTAAGCATGTGTAAATGTTTTTGGTACTTA
TATATCTCATTACAACATAAGGAGCCATTCACCCCCAGCTAAAGACAGGG
AGTTATTCTCTGCAAGGGGCAGAGATATGCTTTTCCTGCTGTGGTGGCCA
AGCTTCGAGATGTCTCCAGTGAGTCCGGCTTTCTGTTACTCAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_m17.b1 MSMg01no390_m17.b1 CHROMAT_FILE:
MSMg01no390_m17.b1 PHD_FILE: MSMg01no390_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:49 2005
         (534 letters)



>mm_chr4_11283541_11284474
          Length = 934

 Score =  965 bits (499), Expect = 0.0
 Identities = 525/534 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttattaaacaagttaattgatatagatcccactttgcttcaaaataaaattcagtgc 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttattaaacaagttaactgatatagatcccactttgcttcaaaataaaattcagtgc 260

                                                                       
Query: 61  ctagaactgccgattttaatagaaccaagcaaatcaacccattgaaacttcatgaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaactgccgattttaatagaaccaagcaaatcaacccattgaaacttcatgaaaaag 320

                                                                       
Query: 121 gttcatattttagcgccagctttccaaatgctccacacttattaactagaactcggcttc 180
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gttcatattttagtgccagctttccaaatgctccacacttattaattagaactcggcttc 380

                                                                       
Query: 181 tagactacggggcttattcctctcggacaggattccacatggcttgcttccagctgccaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 381 tagactacggggcttattcctctcggacaggattccacatggcttgcacccagctgccaa 440

                                                                       
Query: 241 tgagcaagagcacagcttgcaattaagcactgatcctgcgatccaaccaaacagtggctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcaagagcacagcttgcaattaagcactgatcctgcgatccaaccaaacagtggctg 500

                                                                       
Query: 301 aaccaattacacatttatacacaacggagactaccaccctgctcaccccagatagcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 aaccaattacacatttatacacaacggagactaccaccctgctcaccccagatggcctga 560

                                                                       
Query: 361 ataggatagcgaccggaatgctctccaggctaccgcttttaggacacagttgatgctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ataggatagcgaccggaatgctctccaggctaccgcttttaggacacagttaatgctcaa 620

                                                                       
Query: 421 aaaaaagttaagaatacaaaatggacatcaaatcatcctccttgagagtttaacatgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaagttaagaatacaaaatggacatcaaatcatcctccttgagagtttaacatgtaa 680

                                                                 
Query: 481 aagagaatgaataaataaaaaataaataanagacagaaaggaaaggagccaggc 534
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 aagacaatgaataaataaaaaataaataaaagacagaaaggaaaggagccaggc 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no390_m17.g1 MSMg01no390_m17.g1 CHROMAT_FILE:
MSMg01no390_m17.g1 PHD_FILE: MSMg01no390_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:49 2005
         (289 letters)



>mm_chr4_11423808_11424496
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacagctgccaaggcagatgctcgacctcaattcctggggacccacatggtggcagaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agacagctgccaaggcagatgctcgacctcaattcctggggacccacatggtggcagaag 567

                                                                       
Query: 61  agaactgattcattcctacaaggtgtcctgacctccacccatgactccatgacacatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agaactgattcattcctacaaggtgtcctgacctccacccatgactccatgacacatgaa 507

                                                                       
Query: 121 ggaccacacatcacacataaacttaaatatgtaataaaaattggtaaaaagattccctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaccacacatcacacataaacttaaatatgtaataaaaattggtaaaaagattccctgc 447

                                                                       
Query: 181 aggtttcttgttgtttgttttactccattaatccttaatttgattgttctacatgttaag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aggtttcttcttgtttgttttactccattaatccttaatttgattgttctacatgttaag 387

                                                            
Query: 241 catgtgtaaatgtttttggtacttatatatctcattacaacataaggag 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgtgtaaatgtttttggtacttatatatctcattacaacataaggag 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)