Query= MSMg01no390_m19.b1 MSMg01no390_m19.b1 CHROMAT_FILE:
MSMg01no390_m19.b1 PHD_FILE: MSMg01no390_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:49 2005
(469 letters)
>mm_chr4_58191026_58191894
Length = 869
Score = 723 bits (374), Expect = 0.0
Identities = 389/394 (98%)
Strand = Plus / Minus
Query: 1 agtgagcctattgctgtggctttagtaaaaaggattcgcttctctgagggtggggttcct 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 394 agtgagcctattgctgtggctttagtaaaaaggattagcttctctgaggatggggttcct 335
Query: 61 agctaaccttactagaattaagactcagaaaaatggggtggactggggagtgagtttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agctaaccttactagaattaagactcagaaaaatggggtggactggggagtgagtttggg 275
Query: 121 gatgaaaaccaggcttagatataaaccctaggtttacaactggtttaatttctaaaagtt 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 274 gatgaaaaccaggcttagatataaaccctaggcttacaactggtttaatttctaaaagtt 215
Query: 181 aggccataaaaattcagaattcttggacttggatcctagtttcatcgtctattaagtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aggccataaaaattcagaattcttggacttggatcctagtttcatcgtctattaagtgag 155
Query: 241 tgatttgtaggcaaattatcggtcttctaacagttcttagagttctggccagtgagagta 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgatttggaggcaaattatcggtcttctaacagttcttagagttctggccagtgagagta 95
Query: 301 gtacttacttcacaggctcactatgggagtcaaataggttaagacatacaaaagaattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gtacttacttcacaggctcactatgggagtcaaataggttaagacatacaaaagaattag 35
Query: 361 aaaatcactgatgggacctgagaaatcattgagt 394
||||||||||||||| ||||||||||||||||||
Sbjct: 34 aaaatcactgatggggcctgagaaatcattgagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no390_m19.g1 MSMg01no390_m19.g1 CHROMAT_FILE:
MSMg01no390_m19.g1 PHD_FILE: MSMg01no390_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:50 2005
(248 letters)
>mm_chr4_58011043_58011690
Length = 648
Score = 418 bits (216), Expect = e-121
Identities = 242/254 (95%), Gaps = 6/254 (2%)
Strand = Plus / Plus
Query: 1 caggaccaggaatgggagtgggtgggttggggagtcgggaggcgatagggaattttcgga 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 195 caggaccaggaatgggagtgggtgggttggggagtggggaggcgatagggaatttttgga 254
Query: 61 ggggaaactaggaaaggggataacatttgaaatgtaaagagggaaaatatctaaataata 120
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 255 ggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatctaaataata 314
Query: 121 ataacaat------aacaataataataatgaagacacttggtgccaatgaaagacttcct 174
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ataacaataacaacaacaataataataatgaagacacttggtgccaatgaaagacttcct 374
Query: 175 gcctggttcgcctcacagaaaaatttaaatgaattaatctttttgcttgtccaccccaat 234
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcctggttcacctcacagaaaaatttaaatgaattaatctttttgcttgtccaccccaat 434
Query: 235 ctccctcttttgca 248
||||||||||||||
Sbjct: 435 ctccctcttttgca 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
