BAC Information

Click to search

BAC

Clone NameMSMg01-391A06
Chromosome4 (Build37)
Map Location 48,235,377 - 48,235,558
singlet/doubletsinglet
Overlap geneTxndc4
Upstream geneCol15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3, Stx17
Downstream geneInvs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391A06.T7 (MSMg01no391_a06.b1)MSMg01-391A06.TJ (MSMg01no391_a06.g1)
ACCAG492890AG492891
length752768
length of high quality
(start - end)
182 (361 - 542)193 (332 - 524)
definitionCHROMAT_FILE: MSMg01no391_a06.b1 PHD_FILE: MSMg01no391_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:06 2005CHROMAT_FILE: MSMg01no391_a06.g1 PHD_FILE: MSMg01no391_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCTACAA
GTATGCTGTAAAATACTAGTAACTCAATTGAAAAGTGGGCACTAGATCTT
AATAGATAGTTCGCTAAAGTAAGTCTATGTAGGCATATGGTCCAAATGCC
ACCACCACCAACCATGGGGGTAACTGTAACTTAAAACCACAAGGAGAGAC
TAAGACCCTAACGAAAGAAATATTGCATTACCTCTCAAGGAGCAGAATAC
CGTTCAATAGAATTCAACATCCATTCACGCTTCAGAAATAGAAGTGAATG
GCTTCCTTTATCTGAGAATAAGATATTTAAATAAATACCAAATAACTTGA
TGAAACACTAAAAGCTTTTGCCACTGATGTCTGCTTACACTTTTAGTGTA
GTATGCTGGCAGGGCCATATTTAAATTTTAAAGAACAAGCACGCCCATCT
ACAGCAGGTGCTTCACTGCCACACATCTACTGCTTCACTATAATAACTAG
CCCATATTGAACATTTTTTAGCAGTATATTTTTAAAGATATCAAAAATCA
CTAAAGCCACAATGACTATAGAAACTGAAATGCCCCCCAAAGAAAAGACT
CTTTCTAGATAGCCTAGATCACCGCCACATTCTTCCCTAGAGGTTTCCTT
TTAGAAATTAAATCGGCAGGTGCAGTTTAGGACTCGGCGTTACCCCTGCC
AAAGCCCAGAAGACCAAGCCCTGAAGCCTTTTCCCCCACAAACTCCTGTC
CN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGGAGCCTTCATGGAGC
CTTTTTCATGGAAACTCTCTAGGCTACCAAAAGAGAAACATGGATACCAA
ACCAGCCAAAAGTCCTTCAACCTAGAATCTATCCTGCCTACAAAATATGC
AAGGGAAATGGCAGTGCATAACTTGTAGGAGTAGCTAATCAATATGTGAT
TTGACTTAGGACTCACTCCATAAGAAGGAACCCACACCTGACACGGCTTA
GGTAACCATGAACCAGAGGCTAGCTATGCCCAGAGACCAGAGATTTAGCA
TACAATTAAGCTTTATGAGGTAGAAAGAAAGAAAGAAAGAGAGAGAGAAA
GGAAGAAAGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGACATATATCCCAGCACTTGGGAGCCAGAGGCAGG
CGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACACAGCGAGTTCCAGGAC
AGCCAGAGCTACCCAGAGAAACCCTGTCCTCAAACCAAATCAACACAATC
CTGTTGCTAGAAATCTTGGCAAACATAATTTACTTCCCCATTTCAATAAT
CCGACTTATAGCTCTTCCATAAGACCCCGCACCGCCGGTTCTTCGCCATC
ACTTCTTCATGCCCCCCCTCCCTTTCACGGCCCTTTTCTTCCCCCCAACG
CTCCCCCGGTTCAACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_a06.b1 MSMg01no391_a06.b1 CHROMAT_FILE:
MSMg01no391_a06.b1 PHD_FILE: MSMg01no391_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:06 2005
         (182 letters)



>mm_chr4_48235177_48235758
          Length = 582

 Score =  275 bits (142), Expect = 1e-78
 Identities = 172/182 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcttttgccactgatgtctgcttacacttttagtgtagtatgctggcagggccatat 60
           ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||
Sbjct: 201 aaagcttttgccactgatgtctgcttagacttttagtgtaatatgctggcaggggcatat 260

                                                                       
Query: 61  ttaaattttaaagaacaagcacgcccatctacagcaggtgcttcactgccacacatctac 120
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacattttaaagaacaagcacgccaatctacagcaggtgcttcactgccacacatctac 320

                                                                       
Query: 121 tgcttcactataataactagcccatattgaacattttttagcagtatatttttaaagata 180
           |||||||||||||||||||||  | |||||||||||||||  ||||||||||||||||||
Sbjct: 321 tgcttcactataataactagcaaaaattgaacattttttaaaagtatatttttaaagata 380

             
Query: 181 tc 182
           ||
Sbjct: 381 tc 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)