BAC Information

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BAC

Clone NameMSMg01-391E24
Chromosome4 (Build37)
Map Location 144,871,009 - 144,871,241
singlet/doubletsinglet
Overlap geneTnfrsf8
Upstream genePramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b
Downstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391E24.T7 (MSMg01no391_e24.b1)MSMg01-391E24.TJ (MSMg01no391_e24.g1)
ACCAG493116AG493117
length795824
length of high quality
(start - end)
233 (117 - 349)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no391_e24.b1 PHD_FILE: MSMg01no391_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:29 2005CHROMAT_FILE: MSMg01no391_e24.g1 PHD_FILE: MSMg01no391_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGAACGTTCTNNNNNNNNNANNTTTCCAAATCCCCGGNATTCTCTGAGA
ATTCCCACAGCACAACTTGCCAAGGGCAGAGTTCAGATTGCCCAAGGCTC
TTCCCTTATAAATAACGATTGCGTTAGCCTGCTTGTCCTCATTTGTTGGT
TTCCTTGCTGGGTGGAATAATCACAATCTACTTGTAAATCTATTCCGAAC
CCCACGGCCCAAGTCCAGGACAGACTGTACAGCAGTGGCCCCGGGCTCAG
CTGGCTGATCACTGATCCGCTCCAAAGGCCACGCTTGGAGATTCATGAGT
GCCAGAGATTTATTGCTCTGTTCCTACTCTGAACTCTCAGTCCCATGGCA
TAGCTGTGCGAGGCAGGACAGCTCTGACGTAGAAGTTTGCAATTGCGACC
AGCACACTCCGTAAATAGACTCCCTATGTGGAGAGATGACCTGCAATGCC
TCCCGAAAAAAAAGGATAATCCCCCCCACCCCCCAAATAGCATGTTGTGA
CTACCACGTGCCCCCCAATTCAATGTCCGCTGCACTCTCTGTGTATTTTC
CGCTGCCCCACCCCTCCTTTATTTGTCACCCTTCCTCCATAACCCCCCCC
TCAATTTATAATACCCCACCCACCCCCCCTATAAATAATATCCCCCCCCT
CCCCCCCCTCGAAATTTCTCCCCCCCCCATAAATTTCCAGGCGCACCCTC
CCTCTCCAGGAAAATTCTCCCCTCACTCCTTTGTCCNCCCGCCCCCCCCC
TCCCCCCCATAATTANACCCACCCCTCCCCTCCGCCCCTCTCCTC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGATTGTCTTTGTTAGTAAACCAT
TTCTCACATTCACTGCATTTGTAAGGTTTCTCTCCTGAATGAAATTTCTG
ATGAATACTAAGATGGGATTTTCGGGTAAAGAATTTGTCACATTCACTAC
ATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGCATACTAAGATTG
GATTGTCTGGTACAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTC
TCCTTTATGAATTCCCTGATGATTATTTTTGATGGGATTTTTGGGGAGAG
CACTTGTCACATTCATGACATTTGTAAGGATTCTCTTCTGTGCGAAGTCT
CTGATGAATTCTCACATTGCTCCTGTTAGTACAGCATTTCTCATATTCAC
TGCACTCGTCCGTCTTCCCCTCCCGTATAATTTTCTGATGAACTACTCCC
TCCGTCCTGTTCCCCCCCCGTCCCCTTTCCCTTTACCCTCTCTCTCTTTT
TTTTCCTTCTCCCTCGCTCCTCCCCCGCCTTTCCCCCCTTTCTTTTCCCC
TTCCTATCTCTTTTCGCTCTCCCCTTTTTTTCTTCCCCTTCCCCTTTCCC
CTCCCCCTTCTCCTATGTTCGTTCCAATAAGCTTACTACTCCCTCTCTCT
ATTTTCCCTTATCCTTTCACCCCCCCCCCCCCCTTTTATTTCCACCCCCC
CCTTTTCTTCCCCCCCCTCTCCCTTCTTCCCCCCTTTTCTTCCTGCCCTC
CCTTTCCCCCCTTTTTCGTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_e24.b1 MSMg01no391_e24.b1 CHROMAT_FILE:
MSMg01no391_e24.b1 PHD_FILE: MSMg01no391_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:29 2005
         (233 letters)



>mm_chr4_144870809_144871441
          Length = 633

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgcgttagcctgcttgtcctcatttgttggtttccttgctgggtggaataatcacaa 60
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||
Sbjct: 201 gattgcgttagcctgcttgtcctcatttgttggtttccttgctttttggaataatcacaa 260

                                                                       
Query: 61  tctacttgtaaatctattccgaaccccacggcccaagtccaggacagactgtacagcagt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tctacttgtaaatctattccgaaccccagggcccaagtccaggacagactgtacagcagt 320

                                                                       
Query: 121 ggccccgggctcagctggctgatcactgatccgctccaaaggccacgcttggagattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccccgggctcagctggctgatcactgatccgctccaaaggccacgcttggagattcat 380

                                                                
Query: 181 gagtgccagagatttattgctctgttcctactctgaactctcagtcccatggc 233
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgccagagatttaaagctctgttcctactctgaactctcagtcccatggc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)