BAC Information

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BAC

Clone NameMSMg01-391F17
Chromosome4 (Build37)
Map Location 70,539,498 - 70,539,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638, EG667649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391F17.T7 (MSMg01no391_f17.b1)MSMg01-391F17.TJ (MSMg01no391_f17.g1)
ACCAG493149AG493150
length766799
length of high quality
(start - end)
398 (59 - 456)259 (76 - 334)
definitionCHROMAT_FILE: MSMg01no391_f17.b1 PHD_FILE: MSMg01no391_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:32 2005CHROMAT_FILE: MSMg01no391_f17.g1 PHD_FILE: MSMg01no391_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
CTGTCCAATACTGAATGGCTAAGAAGCACCTGAAAAAATGTTCAGCAACC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCAC
ACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTCACAGCAAATGCTGGT
GAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTAGGATTGCAAG
CTTGTAGAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGA
CGTAGTACTACTGTAGGATCCTGCAATACCTCTCTTGGGTATATATCCAG
AAGATGTTCCAACTGGTAAGAAGACACATGCTCTACTATGTTCATTGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACCATAGAGTACTACTC
AGCTATTACAAAGAATGAATTTTTTGAAATTCCTAGGCCAATGGATGGAC
CCGGAGGGCCTTTTCCTGAGTGGAGGAACCCATCCCCAAAAACTCCCCTG
ACAGGACCCCCCGGATTGTGGAATATTCCCCCCAAACTTTTATTCCCCCG
AAACCCCTATTTTTTTTCCAAACCCTTATTTTCGAAAAACGGGAAACCTT
TTTTTGACCCTTCCCCCTTCTTTTACTGGGAACCACACCCCCCCGGAGAG
GTTTTCTACCCACACG
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCACTGAAACTAGCACATACAGTT
TCTCTAGGGGGAATTGTGTTGTTGTTGTTGTTGTTATTATTATTACAAAT
AAAATTTCCTTACAAATTAAAGACTAGCTTTCTATTTCATTTTATTTCGT
ATGAGTAAATCATAGTTTTCAAGTTGGTCTGTTTTATCTGGGTTGTCTAC
TTTTGTCCCGCAGCTATCATAGTAGTCAATTAAGTTTAGCTATATACAAT
AGAAAATAATGTCTCCATTCTTCNTTTATTTTACCAATATGAGCACTTCC
TTATGTTTTCTTATTTGTTCCAGCTAACTCTTTTCCCCTCCCCTGACCTT
CTTGAACAATTGCCCCTCGTTTGCTCTCAGATTTTTACATTCTACGCCAT
TTTTTTTTGCTATAACTTTTATTCCCCTCCTTCCATCCCTCCTCACCCTC
ACTTCCCGCTTTCCTCTTCCCCCCTTTCCCCTTGCTATCTCACTATCCTC
TTTCTACTCCTTCCTCGCTTCCTTTTACAAACTCAACCCTCCCTTCACCA
TTCTCCCCCCCCTTTTTCCCCCACCTCCTCTTCCCTCTGGCGCCCCCTTT
TCTTTCTTTTTTCCCACCCCCCTTCACTTTTTCCCCTTCCCCCCCCTTCC
CCTTTTCTATTCCCCCTTTCTCCCTCCTTTCCTTCCCTTACCCATCTTTT
TCCTCCTCTTTCAACATTCACCTCCCCCCCCTCCCTCCCATTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_f17.g1 MSMg01no391_f17.g1 CHROMAT_FILE:
MSMg01no391_f17.g1 PHD_FILE: MSMg01no391_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:32 2005
         (259 letters)



>mm_chr4_70539229_70539887
          Length = 659

 Score =  395 bits (204), Expect = e-114
 Identities = 233/244 (95%), Gaps = 3/244 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactgaaactagcacatacagtttctctagggggaattgtgttgttgttgttgttgtt 60
           |||||||||||||||||||| ||||||||||||| ||||||   ||||||||||||| ||
Sbjct: 510 ctcactgaaactagcacatagagtttctctagggagaattg---tgttgttgttgttatt 454

                                                                       
Query: 61  attattattacaaataaaatttccttacaaattaaagactagctttctatttcattttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 attattattacaaataaaatttccttacaaattaaagactagctttctatttcattttat 394

                                                                       
Query: 121 ttcgtatgagtaaatcatagttttcaagttggtctgttttatctgggttgtctacttttg 180
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 393 ttagtatgagtaaatcatagttttcaagttgctctgttttatctgggttgtctacttttg 334

                                                                       
Query: 181 tcccgcagctatcatagtagtcaattaagtttagctatatacaatagaaaataatgtctc 240
           ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 tcccgtagttatcatagtagtcaattaagtttagctatatagaatagaaaataatgtctc 274

               
Query: 241 catt 244
           ||||
Sbjct: 273 catt 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)