BAC Information

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BAC

Clone NameMSMg01-391G24
Chromosome4 (Build37)
Map Location 140,674,136 - 140,858,245
singlet/doubletdoublet
Overlap geneD4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2
Upstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21
Downstream geneGm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391G24.T7 (MSMg01no391_g24.b1)MSMg01-391G24.TJ (MSMg01no391_g24.g1)
ACCAG493210AG493211
length800805
length of high quality
(start - end)
326 (64 - 389)381 (74 - 454)
definitionCHROMAT_FILE: MSMg01no391_g24.b1 PHD_FILE: MSMg01no391_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:39 2005CHROMAT_FILE: MSMg01no391_g24.g1 PHD_FILE: MSMg01no391_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,857,920 - 140,858,245)(140,674,136 - 140,674,516)
sequence
GGCCGCTATACGACTCCTATAGGTTCCACAACCGCGGAATTCCCACCCTC
TTGCAGACACTAGCTGAGGGACAACGCCCCCAAGCACACCCCCGGCTGCG
GCCTTGAGCAAAGGCAACCTGTGCGGGCCCCCTCACCTTGCGTGGCTCCA
AGACGCTGGGGCGGGGGCAGGTGATTCACTCCCCCACCTCCAGGTGCCTG
GGCTCCCCGTGGCCCCGAGATGACGGCTCCACACCGCGGGAAGCCGCAAC
CCCACCTGCCGCATTTCCTCCTTCTGAGTCACCCCTTGCTCAGAACACTT
GACTTTGGGACTTCCTGTACTCGCTCCCAGCCCTTAACCTGTCTCCCGAA
CCTGGGAGGGCAGCTTGGGAAGGAGGGAAGGTGTGAGTGGCCGGTGCTGA
CCCCACCCGCCCCCAATGCTGGCCCAAAGGACCCCAGTGAAAAATCGGAT
GGGGCGTAAAGAGACTCTTTTGCTTGGTGCAGGCCCCCCACAGGACCCCT
CCCCCAAAAGCAGGGCCTGCCCCCCAAAGCCCTTCCCCCAAAAACCCCCG
TCAAATAATCCACCCTCCCCCACCCCGGTTAACTCCCCGCCTGTTTCCCC
TCCCAAACCTTATCGGAAGGCCCCCCTCCCTCCAAAGACACCAAAAAACC
CCCCCCCCCCCCCCCTTCCTAAACCCCCCTCCCCGCCTTCAAACCCCCCG
CGTTTATCTCCCCCCCCCTTCTCCTCCCCACCCCCTTGACCCGTCCCTCC
CCCCCCCATACATCTTAACTCCCCACCAGCCCGCCCTCCTCCCCCCCTTT

GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCACCTTATGGCCTTTTGCTCCCTGC
TAAGCTGGTGGGCAAGGCAGAATGACCCCTACCCTACTTCTGAGATCAGC
CATCAGGTTAAGTGATCGTAGCGTGCAGCTGACAGAGCCTGACTCGAAGC
CCATCCTTTGACCTTGCAGCCTGCACTCTGTGGACCCATTAGCCACCACA
CTTAACACCTGACAGCGCCCTGGGCCGGAGAGAACTACACTGCTATAGTG
CTTTGGCTCTGAGCTAAGGACCTTTTTTCGGTGCCCAGCAGGCCGGTTCC
TCCCCTGCCACTGCCCGCACTACACTCACCTGTCCAGGATGGGTTTCTCC
TGCTCCTCTTCAGGGCTGGCACTGCCTAGGATCCGTCTCCGAGCCTCTGC
ATACTCTGCCTCCCGCTGTGCTAGGGACTTGACCGGAATGGCTGGCCCTG
CTTGGTGGACTGGTCCTCGTTGACCCAACCCGCTGCTGGGGGGTTTCCTT
ACGATGGCGCATCTTCCTCCTTCTTTCCCCGCGTCAACCCCCCTTCCTTT
CCTTCTCCCGCTTCCCCTTTTTTGTCCCACTCCCCCTCCCGCTCTCTCTA
TTCCTTTTCCCTTTCTTTATTTCCTTCCCCCCCCCCCCTTTTTTACCCTT
TCCCTTCTCCCCGCCCTCCCCCTTTTCTTCCCCCCTCCCCCTTTTCTCCC
CCGCTCCCCTTCCTCACCCCTTTTCTTCCCCCCCCCCCTCCCCCCTTTCT
CCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_g24.b1 MSMg01no391_g24.b1 CHROMAT_FILE:
MSMg01no391_g24.b1 PHD_FILE: MSMg01no391_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:39 2005
         (326 letters)



>mm_chr4_140857720_140858445
          Length = 726

 Score =  630 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagggacaacgcccccaagcacacccccggctgcggccttgagcaaaggcaacctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctgagggacaacgcccccaagcacacccccggctgcggccttgagcaaaggcaacctgtg 467

                                                                       
Query: 61  cgggccccctcaccttgcgtggctccaagacgctggggcgggggcaggtgattcactccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cgggccccctcaccttgcgtggctccaagacgctggggcgggggcaggtgattcactccc 407

                                                                       
Query: 121 ccacctccaggtgcctgggctccccgtggccccgagatgacggctccacaccgcgggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccacctccaggtgcctgggctccccgtggccccgagatgacggctccacaccgcgggaag 347

                                                                       
Query: 181 ccgcaaccccacctgccgcatttcctccttctgagtcaccccttgctcagaacacttgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ccgcaaccccacctgccgcatttcctccttctgagtcaccccttgctcagaacacttgac 287

                                                                       
Query: 241 tttgggacttcctgtactcgctcccagcccttaacctgtctcccgaacctgggagggcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tttgggacttcctgtactcgctcccagcccttaacctgtctcccgaacctgggagggcag 227

                                     
Query: 301 cttgggaaggagggaaggtgtgagtg 326
           ||||||||||||||||||||||||||
Sbjct: 226 cttgggaaggagggaaggtgtgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_g24.g1 MSMg01no391_g24.g1 CHROMAT_FILE:
MSMg01no391_g24.g1 PHD_FILE: MSMg01no391_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:39 2005
         (381 letters)



>mm_chr4_140673936_140674716
          Length = 781

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaccttatggccttttgctccctgctaagctggtgggcaaggcagaatgacccctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaccttatggccttttgctccctgctaagctggtgggcaaggcagaatgacccctacc 260

                                                                       
Query: 61  ctacttctgagatcagccatcaggttaagtgatcgtagcgtgcagctgacagagcctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacttctgagatcagccatcaggttaagtgatcgtagcgtgcagctgacagagcctgac 320

                                                                       
Query: 121 tcgaagcccatcctttgaccttgcagcctgcactctgtggacccattagccaccacactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaagcccatcctttgaccttgcagcctgcactctgtggacccattagccaccacactt 380

                                                                       
Query: 181 aacacctgacagcgccctgggccggagagaactacactgctatagtgctttggctctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacctgacagcgccctgggccggagagaactacactgctatagtgctttggctctgag 440

                                                                       
Query: 241 ctaaggaccttttttcggtgcccagcaggccggttcctcccctgccactgcccgcactac 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaggacctcagttcggtgcccagcaggccggttcctcccctgccactgcccgcactac 500

                                                                       
Query: 301 actcacctgtccaggatgggtttctcctgctcctcttcagggctggcactgcctaggatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcacctgtccaggatgggtttctcctgctcctcttcagggctggcactgcctaggatc 560

                                
Query: 361 cgtctccgagcctctgcatac 381
           |||||||||||||||||||||
Sbjct: 561 cgtctccgagcctctgcatac 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)