BAC Information

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BAC

Clone NameMSMg01-391H06
Chromosome4 (Build37)
Map Location 97,671,019 - 97,671,256
singlet/doubletsinglet
Overlap geneNfia
Upstream geneLOC620883, EG638698
Downstream geneLOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1, Dock7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391H06.T7 (MSMg01no391_h06.b1)MSMg01-391H06.TJ (MSMg01no391_h06.g1)
ACCAG493222AG493223
length749839
length of high quality
(start - end)
239 (65 - 303)---
definitionCHROMAT_FILE: MSMg01no391_h06.b1 PHD_FILE: MSMg01no391_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:40 2005CHROMAT_FILE: MSMg01no391_h06.g1 PHD_FILE: MSMg01no391_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTATACGACTACTATATTCCCCACATCCGCGGAATTCTGCA
AATTCCCATTCTCAGTACACTGTGGCTGGCCTTAGAGTCTTTGGGTGTGA
AAACCACTCTCAGCTGCTCAGCCTGTGCTGAGTTCCTGCTACATGGCTGC
AGAATCTATTAAAGTCCAGCAGATGAATTGCCCTGGCTCTGCCACAAAGC
CTGGCTACCCGATGGACTTCAGGGTTCCCGAGTTGTTTGTCAATGGAGAG
TGGCAGTGAATGGAACGGGGCCTGTGCCTCAGCCTGGCATGAGGTGGCAC
CCTAGCGTCTGTTTTCTGCCTTGGGAACGTGCACTGCTGAGATTCTCACA
CAGGAATCATCATGGGAGTTCCGAATGCGGTTTGTTCTGAACTTCTTTTT
CAAGCCCTCGGCATGGCTTCCAGCGCCCATACGCAGGCACTTAGGATTTC
TGACCAGCAGTTTTGTAAGAACCAATGAATCCAGTCTAACCCTGACGTGC
ACAAAGAACGCCCGGGGCCAAATCACCCTCCCCAACAGAGGCACAGTAAA
AACACGCCACCCTGTTAGGCCTCACCCCCCCCTTTTGAAATACCCCCCGT
CCTTTTTCTGACCACACCCACCCAACACATTTGTCCTCCAAGCCCCCCCC
CCCTCTAACCTTTTATTTTTTTCCCCCCCCCCCCCTCCCCCCTTGCCCCC
CCCCCCCTTCTCCCCCCTCCCCCCCCCTCCTTACCCTCCTCCCCCTCCC
NTTTCACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACTCCCACTCCACATCCAAACTGAAA
TTGTCTATGTGTCAAATAAGGCCTACAGCACAGTGTGTGTGCGCGTCTGT
GTGCCTGTCGTCGCCCTCTCCTCTGTCCGCCCCTCCTTTCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTTTTCCCCCCTCTCCCTCTCCCCCCCCCCCC
TCTTTCCCTTTCTCCCCCCCCCCCCCCCCCTTTCCCCCCCCCCCTCTTCC
CCCCCCCTTTCCCCCCCCCCCCCCCCCTACCTCCCTCCCCCCTCCTCTCC
CCTCTCCCCCTTCCCCCCCCTTTTCTCCCCCCCCCCCCCCCCCTCCTCGC
TTGCCCCCCCTCCCCCCCCCCCTTTCCCCCCCCCCCCCCCCCCTCCCCTC
CCTTCCCCTCCCCTCCCCCCCCCCCCTTCCCCCCCTTCCCCCCCCCCCCC
CCCCTCCCCCCCCCCCCCCTATCTCCTCCCCCCCTCCTCCCCCCTCCTTC
CTTCCCTCCTCTCCCTCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTCCC
CTCCCCCTCCGCTCCCCCTCTCCCTTTCCCCCTCCCCCCCCCTCTTTCCC
CCCCCCCTCCCCCCCCTTTCCCCCCCCCCCCTCCCCTTCCCTCCTCCCCC
CTTCCCCCCTCCCCCTCTCCCCTCTCCCCTCCTCTCCTCCCCCCCCCTTT
CCCCTTTCCCCCACATTCTCCTTTCTCCCTCCCCCCCCCCCCCCTCCCCC
CTCTCCCTTTCCCTCCCTCACCCCCCCCCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_h06.b1 MSMg01no391_h06.b1 CHROMAT_FILE:
MSMg01no391_h06.b1 PHD_FILE: MSMg01no391_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:40 2005
         (239 letters)



>mm_chr4_97670819_97671456
          Length = 638

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%), Gaps = 1/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtacactgtggctggccttagagtctttgggtgtgaaaaccactctcagctgctcagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtacactgtggctggccttagagtctttgggtgtgaaaaccactctcagctgctcagcct 260

                                                                       
Query: 61  gtgctgagttcctgctacatggctgcagaatctattaaagtccagcagatgaattgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgagttcctgctacatggctgcagaatctattaaagtccagcagatgaattgccct 320

                                                                       
Query: 121 ggctctgccacaaagcctggctacccgatggacttcagggttcccgagttgtttgtcaat 180
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 321 ggctctgccacaaagcctggctacccgatggacttcggggttcccaagttgtttgtcaat 380

                                                                      
Query: 181 ggagagtggcagtgaatggaacggggcctgtgcctcagcctggcatgaggtggcaccct 239
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ggagagtggcagtgaatggaacggg-cctgtgcctcagcctggcatgaggtggcaccct 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 638
Length adjustment: 9
Effective length of query: 230
Effective length of database: 629
Effective search space:   144670
Effective search space used:   144670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)