BAC Information

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BAC

Clone NameMSMg01-391J05
Chromosome4 (Build37)
Map Location 122,791,878 - 122,967,502
singlet/doubletdoublet
Overlap geneBmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1
Downstream geneBmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391J05.T7 (MSMg01no391_j05.b1)MSMg01-391J05.TJ (MSMg01no391_j05.g1)
ACCAG493315AG493316
length739769
length of high quality
(start - end)
475 (65 - 539)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no391_j05.b1 PHD_FILE: MSMg01no391_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:50 2005CHROMAT_FILE: MSMg01no391_j05.g1 PHD_FILE: MSMg01no391_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:51 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(122,791,878 - 122,792,352)(122,967,259 - 122,967,502)
sequence
ATTTGCGGCCGCTAAACGAATACTATATTTCAAACACCGCGGAATTCCAC
TTTGATCCCACCCAGATCCCTGCTGGGGAGGCTGTCACAGCTGCTGAGTT
CCGGATCTACAAAGAACCCAGTACCCACCCGCTCAACACAACCCTCCACA
TCAGCATGTTCGAAGTGGTCCAAGAGCACTCCAACAGGTACCGTCCCTCT
GCCCAGTGCCCACCCCACCTCATAGCCTCATGGTCTCTGGCAGGGGTCCT
GTCCAGGGGGTGAATTTCCAAGAAAGGAAAGGGAAGCCTCCTGGGAAAGG
GGCCTCAGACATGATATAGCGGTTTGGCCTGGAACTCCTGCCCTGTCACT
CTGGCTGTGGGGCCCTCACTAGGTCACAGCACTGAGCCAGTGTCCCCATC
AGCACATGGACTCTAAAATGTCAAGGGTTGATTATCAGGGAAATGTGGAA
CCAAAGATACCAGCCCAGAGTCAAGCAGGGAAGAGGCTCTGAGAGTGGTC
CCCAGGCAGGCACAAGATACAAGCAGCTGTGCCAACCTCCCTTGGCCCTT
GGTTAATTGTCCTTTCATGTCCACAGGGAGTCTGACTTGTTCTTTTTGGA
TCCTCAGACCCTCCGATCTGGGGACGAGGGCTGGCTGGTGCTGGACATCC
CCAGCAGCCCGTGACCCATGGGCTGCTGAAACCTCCCCAAGACCTAAGAA
CTCCCCCCTCATGGGGAAACCAAGGAGGGTGACACCCCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCCTTGGCTCCAAGCTCCGCT
TCCCGCTCTTTGCGAGACTTGAATCTACCCACGAACCTACGAGAAACCAC
GGATAGCGGCGGTTACTCAGGAGGAACAGAACACGATTTCCGGGGGCCCA
AAGGAATGCAGATTAAAGGCTGACAGGAGAGGTTAAAACACACGAGGACC
CCGTCCACCATGAGAACAAGCTCAGATGCCCCAAGTCCCCAGCAGAAAAA
AAGGAAGAGGCAGGGGCTGTTTTGTTAGGACCAGTCCCAGGGCTCCTGGT
TCCGACCAGGGCCACTCCTACCACATCACACTGCCTTCGTGATGAAACCT
GACGACCATGTTTTTAAAACGGCTCATTTCTGTGCATCTATGTAAATGCA
TAGAAAACCTCTGGAAGGATACTAGCCACACTGTTAACAGCGGTTAGTCT
AGCAGCGAGGCAGCTGTCATCGGGCGACCTCTGCTCTCCCGCTCCTACAC
TTGGTAAGCTTAACAGGAAATTATTTCCCCACACCCGACACAGACATAAA
TCCCGCCTTGCCCATTCTACCCCCCCCAGATCCCAAAAGATCGGCGCCCC
GCATTCCTTTTTATGCGTCCTGCCCCTCCCCCTTTGGGTCCCGTTCCCCT
CTCCACCATACGTTCCCATACTTCTCTTGTGTTGCTCTCTCCCACAGGCG
GGCCTCCCCCCTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_j05.b1 MSMg01no391_j05.b1 CHROMAT_FILE:
MSMg01no391_j05.b1 PHD_FILE: MSMg01no391_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:50 2005
         (475 letters)



>mm_chr4_122791678_122792552
          Length = 875

 Score =  857 bits (443), Expect = 0.0
 Identities = 467/475 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatccctgctggggaggctgtcacagctgctgagttccggatctacaaagaacccagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatccctgctggggaggctgtcacagctgctgagttccggatctacaaagaacccagtac 260

                                                                       
Query: 61  ccacccgctcaacacaaccctccacatcagcatgttcgaagtggtccaagagcactccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacccgctcaacacaaccctccacatcagcatgttcgaagtggtccaagagcactccaa 320

                                                                       
Query: 121 caggtaccgtccctctgcccagtgcccaccccacctcatagcctcatggtctctggcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 caggtaccgtccctctgcccagtgcccaccccacctcatagcctcctggtctctggcagg 380

                                                                       
Query: 181 ggtcctgtccagggggtgaatttccaagaaaggaaagggaagcctcctgggaaaggggcc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcctgtccagggggtgcatttccaagaaaggaaagggaagcctcctgggaaaggggcc 440

                                                                       
Query: 241 tcagacatgatatagcggtttggcctggaactcctgccctgtcactctggctgtggggcc 300
           |||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tcagacatgagaaaggggtttggcctgaaactcctgccctgtcactctggctgtggggcc 500

                                                                       
Query: 301 ctcactaggtcacagcactgagccagtgtccccatcagcacatggactctaaaatgtcaa 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ctcactaggtcacagcactgagccagtgtccctatcagcacatggactctaaaatgtcaa 560

                                                                       
Query: 361 gggttgattatcagggaaatgtggaaccaaagataccagcccagagtcaagcagggaaga 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 gggttgattatcagggaaatgtggaaccaaagacaccagcccagagtcaagcagggaaga 620

                                                                  
Query: 421 ggctctgagagtggtccccaggcaggcacaagatacaagcagctgtgccaacctc 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctctgagagtggtccccaggcaggcacaagatacaagcagctgtgccaacctc 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no391_j05.g1 MSMg01no391_j05.g1 CHROMAT_FILE:
MSMg01no391_j05.g1 PHD_FILE: MSMg01no391_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:51 2005
         (244 letters)



>mm_chr4_122967059_122967702
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggccttggctccaagctccgcttcccgctctttgcgagacttgaatctacccacgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cttggccttggctccaagctccgcttcccgctctttgcgagacttgaatctacccacgaa 385

                                                                       
Query: 61  cctacgagaaaccacggatagcggcggttactcaggaggaacagaacacgatttccgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctacgagaaaccacggatagcggcggttactcaggaggaacagaacacgatttccgggg 325

                                                                       
Query: 121 gcccaaaggaatgcagattaaaggctgacaggagaggttaaaacacacgaggaccccgtc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 gcccaaaggaatgcagattaaaggctgacaggagaggttaaaacgcacgaggaccccgtc 265

                                                                       
Query: 181 caccatgagaacaagctcagatgccccaagtccccagcagaaaaaaaggaagaggcaggg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caccacgagaacaagctcagatgccccaagtccccagcagaaaaaaaggaagaggcaggg 205

               
Query: 241 gctg 244
           ||||
Sbjct: 204 gctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)