XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATGAT
ATATTTGCCCCGTGTGGAGATCAAAGATACATGCTTGCTTCCAGTTCATT
TATGTAGAAATATACATGAAATACGCTGTATTCATTTGAGAGATATTAGT
TAACACACAAATAATCACACAAATGTGTATTTTCCTCACAGTAGTCAGAA
AGCTGTATCAGAACATAAATGCCAAGAGAATGCTTAGAGACTAATAATGT
CACCTCTACCTTTTAAGAAGAGACACTTTAGTATAACCTGATTGAGAATC
TAATTGGAAAGAAAATCCATAGCATGTCTACAGCATTACTATTGGTTTAG
TTTATTGACTAGTAATTTGAGCATAATTTATACCAAATGTCTAAGGAGAT
TAAGTAATCATCACATAAAAGTAGGGTTTAAGTGGTTCATTTTAAGTAAA
ATTATTTATATCTATTTTTGCATTTTGTTAAATAAGAAGGGTAAGGAATA
ATGAACAAGGCTAACTCTGGTTTTACCTATCTTTATAGTCTACAGGGAGG
TATAAGCCACTACCGCCTCCATTTATATCCCCTGCCCTCCAGTACGCAGC
ACAAATTTAGAGTCCAAGATTTCTGGACGTCAGCCAGGGTCCCTGGTTCG
GACCGGAAATCCTTGTCTTGGCTCCGGACACTTTTCTTCTTCCGGCCTTC
CAACCCCCAAGTGGCCAAGAGGTCCCCCCCAAGAGTTCCCTCCCTATAAA
CCCCCCCG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTGGTACTGTAAATCCTG
TCAAAAGCTGGTAGCTGATTGCTTATTAGACTATAATGAAAAAACCCACA
CCTGGATTTCTAGACCTGTCTAATATATATATATATATATATATATATAT
ACATATATATATATATATGTATATATATATATATATATATATATATATTA
GACAGGTCTAGAAATCCAGGTGTGGGTTTTTTCATTATAGTCTAATAAGC
AATCAGCTACCGGCTTTTGACAGGATTTACAGTACGAGGGGTXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATACCCC
TTCTGACAACTGCCGTCCCCAGCATTCTCCCATCCCTTCCCTTCCCTCCT
CCCCTACCCCCTCACACCTAACCATGCCGCTTCCCGCTCCACCCCTCCCT
CTATCGCCTTCCTGTTCGCGGCCGCGGATCCCTCCGAGACACCCCCTTTT
CCCCCCCCCCCTCTTCGCCCCTCGCCCGCTTTTGCGTTCCACCCCCCCCC
CCCCCCTTCCCTTTTTTCTTCTCCCCTCCCCCTTCCCCTGTTTCTTTCCC
CCTCCCTCCGTTGCTGCCCTCCCTTCCCCCGTGCTTGCTGCGTCGCCTTT
CCCTTAGCGNCCACTCCCCGCCCGCCCGCCCCTTATTCCTG

Query= MSMg01no391_n01.b1 MSMg01no391_n01.b1 CHROMAT_FILE:
MSMg01no391_n01.b1 PHD_FILE: MSMg01no391_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:09 2005
         (449 letters)



>mm_chr4_38640822_38641670
          Length = 849

 Score =  779 bits (403), Expect = 0.0
 Identities = 436/447 (97%)
 Strand = Plus / Plus

                                                                       
Query: 3   tggagatcaaagatacatgcttgcttccagttcatttatgtagaaatatacatgaaatac 62
           |||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct: 203 tggagatcaaagatgcatgcttgcttctagttcacttatgtagaaacatacatgaaatac 262

                                                                       
Query: 63  gctgtattcatttgagagatattagttaacacacaaataatcacacaaatgtgtattttc 122
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 actgtattcatttgagagatattagttaacacacaaattatcacacaaatgtgtattttc 322

                                                                       
Query: 123 ctcacagtagtcagaaagctgtatcagaacataaatgccaagagaatgcttagagactaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcacagtagtcagaaagctgtatcagaacataaatgccaagagaatgcttagagactaa 382

                                                                       
Query: 183 taatgtcacctctaccttttaagaagagacactttagtataacctgattgagaatctaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taatgtcacctctaccttttaagaagagacactttagtataacctgattgagaatctaat 442

                                                                       
Query: 243 tggaaagaaaatccatagcatgtctacagcattactattggtttagtttattgactagta 302
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 tggaaagaaaatccatagcatgtctacagcattactattggattagtttattgactagta 502

                                                                       
Query: 303 atttgagcataatttataccaaatgtctaaggagattaagtaatcatcacataaaagtag 362
           |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct: 503 atttgagcataatttataccaaatgtctaaggagattaagtaattatcagataaaaatag 562

                                                                       
Query: 363 ggtttaagtggttcattttaagtaaaattatttatatctatttttgcattttgttaaata 422
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 ggtttaagtggttcattttaagtaaaattatttatatctatttttgcattatgttaaata 622

                                      
Query: 423 agaagggtaaggaataatgaacaaggc 449
           |||||||||||||||||||||||||||
Sbjct: 623 agaagggtaaggaataatgaacaaggc 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)