BAC Information

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BAC

Clone NameMSMg01-391P17
Chromosome4 (Build37)
Map Location 96,906,628 - 96,907,016
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391P17.T7 (MSMg01no391_p17.b1)MSMg01-391P17.TJ (MSMg01no391_p17.g1)
ACCAG493625AG493626
length784790
length of high quality
(start - end)
388 (67 - 454)298 (72 - 369)
definitionCHROMAT_FILE: MSMg01no391_p17.b1 PHD_FILE: MSMg01no391_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:22 2005CHROMAT_FILE: MSMg01no391_p17.g1 PHD_FILE: MSMg01no391_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATTTCCACAGGATCCGCGGAATTCTTGGA
ATACCTGACACTCTCATGATGTACAGTGTCCCCAAGAAGATCTCTGATTT
CTTTGTCACACAGAGTCCCTCTGAACTGAGAGCAAACAGAACAAAAATAA
TTCATTTTAACGTTAAATGAAAGAATTAAAACTGTGGTGGCCACTATTGA
ATGACGCCCTCAAATTTTTTCTATTCTGTCGAAAAGAAACAAAGTGACAC
TTCATTTTCTCTTTGTGAAGGTTGGTAAGCATGCAAAATACTGGAGTCTA
TTATAAACAAATGGTCCTCAAGTGCAAACAGAAAGGCCCTATCCATATAG
GGACAGCAGCAGTGAAGAATACTGATTGATGGTTGCTTTAAGGATTTTAG
TAAGCACATGAATGAATAGTCACACAATGATGTGGGTACTGGTTTTTGTT
TGTTTGCTTGCTTGCTTTTAACACACACCCATAACTTAACCCGCAACACC
AATATCCGACGCCATAACATCCCCACCCCCCCATTTACCGCCCACTAAAA
CCTTCCCCCGTTTTCCTACTGCCCCTCCCCCTCACTTTCGATGATACCCC
ACCCCCCCCCCCCCCCTCTCCTTCCCTTCTTTCCACCCTCCCACCCCCCC
CCCCTCCCCTCTCCCCTCTTTCTCCTTCCCTCTCCCTCTTATTTCCCCCC
CCCCCCCCCTCTCTCTCTTCCTCCCCTCCCCCCCCCCCTTCTCCCTCCCC
CCCCCCCCCCCCCCCCCCTCCTCCTCCTCCCCCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTTCTTGTGGCTGTCTTCTTTTAGTTTT
GTTGAGGGATTATCTTCTTGTTTTTTTCTAGGGCGTGGTTCCCGTCCTTG
TATTGGTTTTTTTCTGTTATTATCCTTTGAAGGGCTGGATTCGTGGAGAG
ATAATGGGTGAATTAATTTTTGTCATGGAATACTTTGGTTTCTCCATCTA
TGATAATTGAGAGTTTGGCTGGGTATAGTAGCCTGTGCTGGAATTTGTGT
TCTCTTAGTGTCTGTTTTCTTTTGTCCAGGCTCTTCTGGCTTTCATAGTC
TCTGGTGATATATCTGGTGTAACTCTGATAGGCTTGCCTTTATATGTTAC
TTGACCTTTCCCCCTTACTGCTTTTAGCATTCTATCTTTATTTAGCGCAT
TTGATGTTCTGATTATTATGTGCTCGCAGGAACTTCCTCTCCGTCCCTCC
CCCTTTCCCCTCCCCCACCTTTCTCCGTTCCTTCCCGCTCTTCCCTTTCT
CCACCACCCTCTTACTCCCTTTTCATTCACTCCCCTCCCGACCCTCTTCC
TCCCCCCCTTTTCCCCCCCCTCCTCTTCCCCCCATCCCCCACTTTCCCTT
CTTTTTCTTCTTTCCCCCTTCCCTTGTTCCTCCTCCCCCCCCCTCCCTTT
TCTTTTCCCCTTTCTCTCTCCTTCCTTCCCTCCCCCTCCTTTCTCTTCCC
TTTCCCTCTCCCCCCCCTCCCCCCCCCTCTCCTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_p17.b1 MSMg01no391_p17.b1 CHROMAT_FILE:
MSMg01no391_p17.b1 PHD_FILE: MSMg01no391_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:22 2005
         (388 letters)



>mm_chr4_96906428_96907216
          Length = 789

 Score =  658 bits (340), Expect = 0.0
 Identities = 377/390 (96%), Gaps = 3/390 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgtacagtgtccccaagaagatctctgatttctttgtcacacagagtccctctgaac 60
           ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct: 201 tgatgtacagtgtccccaagaagctgtctgttttctttgtcacacagagtccctctgaac 260

                                                                       
Query: 61  tgagagcaaacagaacaaaaataattcattttaacgttaaatgaaagaattaaaactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgagagcaaacagaacaaaaataattcattttaacgttaaatg-aagaattaaaactgtg 319

                                                                       
Query: 121 gtggccacta--ttgaatgacgccctcaaattttttctattctgtcgaaaagaaacaaag 178
           ||||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct: 320 gtggccactattttgaatgacgccctcaatttttttctattctgttgaaaagaaacaatg 379

                                                                       
Query: 179 tgacacttcattttctctttgtgaaggttggtaagcatgcaaaatactggagtctattat 238
           |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tgacacttaattttctctttgtaaaggctggtaagcatgcaaaatactggagtctattat 439

                                                                       
Query: 239 aaacaaatggtcctcaagtgcaaacagaaaggccctatccatatagggacagcagcagtg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacaaatggtcctcaagtgcaaacagaaaggccctatccatatagggacagcagcagtg 499

                                                                       
Query: 299 aagaatactgattgatggttgctttaaggattttagtaagcacatgaatgaatagtcaca 358
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 aagaatactgattgatggttgctttaaggattttagtaagtacatgaatgaatagtcaca 559

                                         
Query: 359 caatgatgtgggtactggtttttgtttgtt 388
           ||||||||||||||||||||||||||||||
Sbjct: 560 caatgatgtgggtactggtttttgtttgtt 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space:   295620
Effective search space used:   295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)