Query= MSMg01no392_d06.b1 MSMg01no392_d06.b1 CHROMAT_FILE:
MSMg01no392_d06.b1 PHD_FILE: MSMg01no392_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
(553 letters)
>mm_chr4_34310055_34311007
Length = 953
Score = 696 bits (360), Expect = 0.0
Identities = 405/424 (95%), Gaps = 11/424 (2%)
Strand = Plus / Minus
Query: 4 ggaattctcaaattacactgtattttcataaaaaggaagtcttttaacttctctactgct 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaattctcaaataacactgtattttcataaaaaggaagtcttttaacttctctactgct 364
Query: 64 tatctgaagctatatgttggtgagtgctttcttcaaatcagagcctttactttgttgctt 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 tatctgaagctatatgttggtgagtgctttcttcaaatcagagccttaactttgttgctt 304
Query: 124 gttttccagttcttcagttgggtttctcttagtttctgcaacattttctcctgcttttga 183
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 gttttccaattcttcagttgggtttctctcagtttctgcaacattttctcctgcttttga 244
Query: 184 tgttgtctcagtttcctatgtgcctcag-acctgtactaggtgttttttt--tttttttc 240
|||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct: 243 tgttgtctcagtttcctatgtgcctc-gcacctgtactaggtgtttttttgttttttttc 185
Query: 241 -ttatgttggaagctttcctccaatttctggcaaaacttatctgtgtatctgtagctaag 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 184 cttatgttggaagctttcctccaatttctggcaaaacttatctgtgtttctgtagctaag 125
Query: 300 aactgaaactgaacagctcattggaagctttgtgtacatatgtggggctggctgatgtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aactgaaactgaacagctcattggaagctttgtgtacatatgtggggctggctgatgtga 65
Query: 360 gcagttgcacctagagcttgttagagcttctcatg------gggttcagagaaggatgct 413
||||||| ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 64 acagttgcgcctagagcttgttagagctcctcatgtacatggggttcagagaaggatgct 5
Query: 414 cccc 417
||||
Sbjct: 4 cccc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no392_d06.g1 MSMg01no392_d06.g1 CHROMAT_FILE:
MSMg01no392_d06.g1 PHD_FILE: MSMg01no392_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
(415 letters)
>mm_chr4_34246518_34247332
Length = 815
Score = 779 bits (403), Expect = 0.0
Identities = 412/415 (99%)
Strand = Plus / Plus
Query: 1 aggcatctggaaggcaaggaattctgaacttagacaatttcactgtaatacctcatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatctggaaggcaaggaattctgaacttagacaatttcactgtaatacctcatacat 260
Query: 61 cacaaaccttaaatttataagaatttagataagttctgtaccatggtggaggactcagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaaccttaaatttataagaatttagataagttctgtaccatggtggaggactcagag 320
Query: 121 ttttttcacagttccattttgtatctctttttcacaaactgtttctttcattctcagagc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttcacagttccactttgtatctctttttcacaaactgtttctttcattctcagagc 380
Query: 181 agaaaattattctcccatggcttgatgtcaagagctatacttcttaaaggatggtggtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaattattctcccatggcttgatgtcaagagctatacttcttaaaggatggtggtcc 440
Query: 241 ctcctgctctttatcagctatcctgctgtcttgcttagttggtcattcaacaagcaatca 300
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgctcttcatcagctatcttgctgtcttgcttagttggtcattcaacaagcaatca 500
Query: 301 ctgggcccaagctatattccaggtactctggagtgtgggaaaacagcctagtcctgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggcccaagctatattccaggtactctggagtgtgggaaaacagcctagtcctgattt 560
Query: 361 agggagcttctagattagaagtagattcagacatggagccaaataattaccacta 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggagcttctagattagaagtagattcagacatggagccaaataattaccacta 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|