BAC Information

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BAC

Clone NameMSMg01-392D06
Chromosome4 (Build37)
Map Location 34,246,718 - 34,310,477
singlet/doubletdoublet
Overlap geneLOC100039220
Upstream geneGabrr1, Acy1l2, Srrp, Pnrc1, Rngtt, LOC100041919, LOC100041924, Cnr1, Spaca1
Downstream geneLOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392D06.T7 (MSMg01no392_d06.b1)MSMg01-392D06.TJ (MSMg01no392_d06.g1)
ACCAG493792AG493793
length743757
length of high quality
(start - end)
553 (52 - 604)415 (73 - 487)
definitionCHROMAT_FILE: MSMg01no392_d06.b1 PHD_FILE: MSMg01no392_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005CHROMAT_FILE: MSMg01no392_d06.g1 PHD_FILE: MSMg01no392_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,310,055 - 34,310,477)(34,246,718 - 34,247,132)
sequence
CCCCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAAATTACACTGTATTTTCATAAAAAGGAAGTCTTTTA
ACTTCTCTACTGCTTATCTGAAGCTATATGTTGGTGAGTGCTTTCTTCAA
ATCAGAGCCTTTACTTTGTTGCTTGTTTTCCAGTTCTTCAGTTGGGTTTC
TCTTAGTTTCTGCAACATTTTCTCCTGCTTTTGATGTTGTCTCAGTTTCC
TATGTGCCTCAGACCTGTACTAGGTGTTTTTTTTTTTTTTCTTATGTTGG
AAGCTTTCCTCCAATTTCTGGCAAAACTTATCTGTGTATCTGTAGCTAAG
AACTGAAACTGAACAGCTCATTGGAAGCTTTGTGTACATATGTGGGGCTG
GCTGATGTGAGCAGTTGCACCTAGAGCTTGTTAGAGCTTCTCATGGGGTT
CAGAGAAGGATGCTCCCCTCCCCTGGTGGACAACACTTTGGAGTTGGTAG
TGGAAATACTCCAGAGAGGGAGGGGTATCTATTTCATCATGCAGAGTAAG
AGTGAGAACTTGGCTTAGGAATACCTTACCTGTTCTTTAAACATATTTTC
AACGAATCTCCATCTTCAGCACAGCCTAGTACCCAAGGCATCTTGGTTAC
TCCCCTGAGCTTCTTTTAAAGTTCTGTGGACAAGCCAGCTCTTAACTGAT
ATCCGTTGCTATAACTGGTACATTTGTCTGGTGCCCTATACCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGCATCTGGAAGGCAAGGAATTCTGAA
CTTAGACAATTTCACTGTAATACCTCATACATCACAAACCTTAAATTTAT
AAGAATTTAGATAAGTTCTGTACCATGGTGGAGGACTCAGAGTTTTTTCA
CAGTTCCATTTTGTATCTCTTTTTCACAAACTGTTTCTTTCATTCTCAGA
GCAGAAAATTATTCTCCCATGGCTTGATGTCAAGAGCTATACTTCTTAAA
GGATGGTGGTCCCTCCTGCTCTTTATCAGCTATCCTGCTGTCTTGCTTAG
TTGGTCATTCAACAAGCAATCACTGGGCCCAAGCTATATTCCAGGTACTC
TGGAGTGTGGGAAAACAGCCTAGTCCTGATTTAGGGAGCTTCTAGATTAG
AAGTAGATTCAGACATGGAGCCAAATAATTACCACTAACATGAGCTCCAA
GGAGCTGTGAAAACTCACGCAAATTTTGGATAATGTACCACGCGGTGAGT
GAAGATGCGAAGATGAACCCCTTCTGTAATCAAAGAATCCTCCTTGAATC
CCTCCAAAGAGGACCCCCCGGCCCTATTCAGTTCCGAAAATACGGGGAAT
TTTTCCCGGGTAATTTTTTCCCCTTAAAACCCACACAAGGGGGGGACCCC
ACCCATCCTGGTGTATTTTTACCGGGGCTTCCCCCACCCCTTAAAAAATT
TTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_d06.b1 MSMg01no392_d06.b1 CHROMAT_FILE:
MSMg01no392_d06.b1 PHD_FILE: MSMg01no392_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (553 letters)



>mm_chr4_34310055_34311007
          Length = 953

 Score =  696 bits (360), Expect = 0.0
 Identities = 405/424 (95%), Gaps = 11/424 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaaattacactgtattttcataaaaaggaagtcttttaacttctctactgct 63
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaattctcaaataacactgtattttcataaaaaggaagtcttttaacttctctactgct 364

                                                                       
Query: 64  tatctgaagctatatgttggtgagtgctttcttcaaatcagagcctttactttgttgctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 363 tatctgaagctatatgttggtgagtgctttcttcaaatcagagccttaactttgttgctt 304

                                                                       
Query: 124 gttttccagttcttcagttgggtttctcttagtttctgcaacattttctcctgcttttga 183
           |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 303 gttttccaattcttcagttgggtttctctcagtttctgcaacattttctcctgcttttga 244

                                                                       
Query: 184 tgttgtctcagtttcctatgtgcctcag-acctgtactaggtgttttttt--tttttttc 240
           |||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||||
Sbjct: 243 tgttgtctcagtttcctatgtgcctc-gcacctgtactaggtgtttttttgttttttttc 185

                                                                       
Query: 241 -ttatgttggaagctttcctccaatttctggcaaaacttatctgtgtatctgtagctaag 299
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 184 cttatgttggaagctttcctccaatttctggcaaaacttatctgtgtttctgtagctaag 125

                                                                       
Query: 300 aactgaaactgaacagctcattggaagctttgtgtacatatgtggggctggctgatgtga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aactgaaactgaacagctcattggaagctttgtgtacatatgtggggctggctgatgtga 65

                                                                       
Query: 360 gcagttgcacctagagcttgttagagcttctcatg------gggttcagagaaggatgct 413
            ||||||| ||||||||||||||||||| ||||||      |||||||||||||||||||
Sbjct: 64  acagttgcgcctagagcttgttagagctcctcatgtacatggggttcagagaaggatgct 5

               
Query: 414 cccc 417
           ||||
Sbjct: 4   cccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_d06.g1 MSMg01no392_d06.g1 CHROMAT_FILE:
MSMg01no392_d06.g1 PHD_FILE: MSMg01no392_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:39 2005
         (415 letters)



>mm_chr4_34246518_34247332
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatctggaaggcaaggaattctgaacttagacaatttcactgtaatacctcatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatctggaaggcaaggaattctgaacttagacaatttcactgtaatacctcatacat 260

                                                                       
Query: 61  cacaaaccttaaatttataagaatttagataagttctgtaccatggtggaggactcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaaaccttaaatttataagaatttagataagttctgtaccatggtggaggactcagag 320

                                                                       
Query: 121 ttttttcacagttccattttgtatctctttttcacaaactgtttctttcattctcagagc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttcacagttccactttgtatctctttttcacaaactgtttctttcattctcagagc 380

                                                                       
Query: 181 agaaaattattctcccatggcttgatgtcaagagctatacttcttaaaggatggtggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaattattctcccatggcttgatgtcaagagctatacttcttaaaggatggtggtcc 440

                                                                       
Query: 241 ctcctgctctttatcagctatcctgctgtcttgcttagttggtcattcaacaagcaatca 300
           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctgctcttcatcagctatcttgctgtcttgcttagttggtcattcaacaagcaatca 500

                                                                       
Query: 301 ctgggcccaagctatattccaggtactctggagtgtgggaaaacagcctagtcctgattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgggcccaagctatattccaggtactctggagtgtgggaaaacagcctagtcctgattt 560

                                                                  
Query: 361 agggagcttctagattagaagtagattcagacatggagccaaataattaccacta 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggagcttctagattagaagtagattcagacatggagccaaataattaccacta 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)