BAC Information

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BAC

Clone NameMSMg01-392H01
Chromosome4 (Build37)
Map Location 105,899,842 - 106,095,576
singlet/doubletdoublet
Overlap geneUsp24
Upstream genePpap2b, LOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
Downstream geneLOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H01.T7 (MSMg01no392_h01.b1)MSMg01-392H01.TJ (MSMg01no392_h01.g1)
ACCAG493974AG493975
length781791
length of high quality
(start - end)		299 (73 - 371)332 (71 - 402)
definitionCHROMAT_FILE: MSMg01no392_h01.b1 PHD_FILE: MSMg01no392_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:57 2005CHROMAT_FILE: MSMg01no392_h01.g1 PHD_FILE: MSMg01no392_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,095,277 - 106,095,576)(105,899,842 - 105,900,173)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCAAGTCTGTCCTCAGTCTAGGTGAAGAGTCAGACGGATTACAA
ATCCCAGCACAGTCAACATCCACAGCAAGCTATGGTGGCAGTACTATGTT
TACTACTTAAGAGTGACAGCAGTAAGATGATGTGACAGGGCTGAGAGGAG
TTTAGGAGCGTCAGTGCCAAGTCTGTCCATGCACATAGCACAGCACACAG
TGAAAGGCCCAGACTCTGAGATCCCCAGAGCTGGGCCTAGATCCATTTCA
CCAACACATGTGCTTTGTCATCTTGCATAAATTACTTAGCACAGTTGTGC
TTAAGCTTAAATTCTTCCTGGAGAATGGGAGAAACATTGCTGTGTGTATC
CAAACTGTACAGGATGACCCGCGTGCTACAAAGGGCCTGGCTGGAGAAGT
GACCCAAGCCCTTGCAGGAGCCCAGAACATCGTGACTTGGATCCCAGACC
TTGCACGGTTGCAGACTGACTTTTGCTTTTGATTGCGACCTGCGCCCTGA
TATTCTCCCCCCCCGAACTAAGATCCCGCCTTACTGCATCTCCCCCCTCC
CGACCCTTCTAACTGCTCAAACACCCCCCCCTCTTTCCACCCTCCATCTC
CCCCCACCATGCCCCCCCCCGCTCTCTATTTCCCCCCCCCCCCTCTTCTC
TACCCGTCTCCTCTCGCGCCTCCTCCCCCCACCCCCCTTTCCTCCTCCCC
CCTCTCCCCCCTTTTCCCCCACCCCCCCCCT

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATACTCAAATCTGATGCCAATAAGTTTGAC
CAGTGAGGCTGCTGCTTAGTGTCACATGTCCATAACTTCAGGAAGCAGAT
CCCATTTCCGCGCACCCGTCAGTCACAGCATTAGCAAGATGACCTGTCCA
CTTAGGGACCTCCGTACTAAGGCAAAAGTCGCCTGGCCACCATTCACTGG
TGAACTTATGCAGGTGGGTTACATGCCTCCTCTGTCTGGGTTTCGTGCTC
GTAAGTCATTCTTGCAATATGCCATTCCTGCAAGAAGCCAGGAAAAGCCC
TCTGAAGGCTGCTCCTGCTCTCCGAAGCATCGTTAGCATGTACATTCCCT
CGTCCAGTAGGGCATCAATGCGCTACTGGTACTGGCATAATTGAAGACGA
AACTACCGGACTTGGAGCGCGCCTTACACTATTTCCTATTCCTCGCCTAT
TCCTCCCCCCAGCGTCCTTGAACTTGATTCTCGCCTTAAGACCAACCCTG
CACCCGTTTCTCTATTGGCTTCTCCCTCACTATCTTTCCCCCTCCTTCCT
TTTTGTCCCCCCATTACTCCCTGTTCCCTCTCCTTTTCCTTTTGCATATC
GCCCGCTGCCTTTCCCTCGTTTCTTCTTCCGCTTTTTTTCTTCTACGCCC
CCCCCTAATTTCTATTTCCCTGCCCCCTCTCCTTCCTTTTGCCCCACGTC
TCTCACCCTCCTTCTACACCCCTATTGTTCGTCTCCCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h01.b1 MSMg01no392_h01.b1 CHROMAT_FILE:
MSMg01no392_h01.b1 PHD_FILE: MSMg01no392_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:57 2005
         (299 letters)



>mm_chr4_106095077_106095776
          Length = 700

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%), Gaps = 1/300 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaggtgaagagtcagacggattacaaatcccagcacagtcaacatccacagcaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctaggtgaagagtcagacggattacaaatcccagcacagtcaacatccacagcaagcta 441

                                                                       
Query: 61  tggtggcagtactatgtttactacttaagagtgacagcagtaagatgatgtgacagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggtggcagtactatgtttactacttaagagtgacagcagtaagatgatgtgacagggct 381

                                                                       
Query: 121 gagaggagtttaggagcgtcagtgccaagtctgtccatgcacatagcacagcacacagtg 180
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 gagaggagtttaggagtgtcagtgccaagtctgcccatgcacatagcacagcacacagtg 321

                                                                       
Query: 181 aaa-ggcccagactctgagatccccagagctgggcctagatccatttcaccaacacatgt 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaaggcccagactctgagatccccagagctgggcctagatccatttcaccaacacatgt 261

                                                                       
Query: 240 gctttgtcatcttgcataaattacttagcacagttgtgcttaagcttaaattcttcctgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gctttgtcatcttgcataaattacttagcacagttgtgcttaagcttaaattcttcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no392_h01.g1 MSMg01no392_h01.g1 CHROMAT_FILE:
MSMg01no392_h01.g1 PHD_FILE: MSMg01no392_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:57 2005
         (332 letters)



>mm_chr4_105899642_105900373
          Length = 732

 Score =  619 bits (320), Expect = 0.0
 Identities = 329/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactcaaatctgatgccaataagtttgaccagtgaggctgctgcttagtgtcacatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactcaaatctgatgccaataagtttgaccagtgaggctgctgcttagtgtcacatgtc 260

                                                                       
Query: 61  cataacttcaggaagcagatcccatttccgcgcacccgtcagtcacagcattagcaagat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cataacttcaggaagcagatcccatttccgcacacccgtcagtcacagcattagcaagat 320

                                                                       
Query: 121 gacctgtccacttagggacctccgtactaaggcaaaagtcgcctggccaccattcactgg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gacctgtccacttagggacctccgtactaaggcaaaggtcgcctggccaccattcactgg 380

                                                                       
Query: 181 tgaacttatgcaggtgggttacatgcctcctctgtctgggtttcgtgctcgtaagtcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacttatgcaggtgggttacatgcctcctctgtctgggtttcgtgctcgtaagtcatt 440

                                                                       
Query: 241 cttgcaatatgccattcctgcaagaagccaggaaaagccctctgaaggctgctcctgctc 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 cttgcaatatgccattcctgcaagaagccaggaaaagccctctgaagggtgctcctgctc 500

                                           
Query: 301 tccgaagcatcgttagcatgtacattccctcg 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 tccgaagcatcgttagcatgtacattccctcg 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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