BAC Information

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BAC

Clone NameMSMg01-392M02
Chromosome4 (Build37)
Map Location 123,838,077 - 123,838,314
singlet/doubletsinglet
Overlap genenone
Upstream geneHpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M02.T7 (MSMg01no392_m02.b1)MSMg01-392M02.TJ (MSMg01no392_m02.g1)
ACCAG494215AG494216
length783790
length of high quality
(start - end)
314 (72 - 385)238 (70 - 307)
definitionCHROMAT_FILE: MSMg01no392_m02.b1 PHD_FILE: MSMg01no392_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:23 2005CHROMAT_FILE: MSMg01no392_m02.g1 PHD_FILE: MSMg01no392_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAACAGGATCCGC
GGAATTCTCTGGTTACCTTTCTATAACAGTTGTGTGGTCTTATGTAAGTA
CAGCATGTAAGGGTTTCTCTTCCTCCACATCTTCACCAGCATGCGCTATT
TTTGTTGTTCTTGTCTTCTGGTAACAGCCATTCTTGCTGGAATTAGGTGA
TATACTATTCCTTTGATCTGCATTTGTTTGATAACGTTTAGTCATGTTGA
ATATATTTTGTTTTGTATACCATGGGCCATTTCTACACCCCTAAAAAATG
TCTCCTTGGATTTATTGTTATCTTTTTTATAATTATTATCTTCTTGAGCA
GGGTTTCTCTGTGTAGCCTTGGCTGCTCTGGAACTCGCTCTGCACATCAA
GCTGGTTTCATATTCCCCCACCTCTGCCTGTCTCTGTTCCTCAAATGCTG
GCACTGACCACGTCCGTCATCCCCGCCCGGCTTACTGTCTCACCTTACCC
CTCCACTCTGACACCCTCGCCTGTTCCTCCTCCACCCCCTATCCCCCCCC
CCTCCCTCTCCCCCCTCCCTTTCCCTCTTTTCTTCCCACTCTCCCCTATC
TCCCCCCCCCTTCATTTTTATTTCTCCCCCCCCCGTTTTCTCCCCCCCCC
CCCTTATCTCCCCCCCTTTTCTCTCCCCCCCATCTTCTCCCCCCACTTCC
CCCCCCTCCTCCATTACCCCCTCTTTTTCCTCCCCCTCTCCCCTCCCTCC
TTTCATCTCCCCCCCCCTCTTCCCCTCCCGCCG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGGGGGGAAGCAAGCAAGAGAGGCAAAAA
GCAATTTGCAATTTCGATGCGCAAGGGGCAATTTCTACAGACAATTCTTG
GTGCCCATAGCCGCCCACCACCTCCGGCGGCTCCACCTGAAGCCCGCAGA
GCATCATTTCCCATTCTTGTCTCTGAGATAATAAGTCAGAGAGAAGCTTC
TTATTTCAAATCAAAACTACTTTCCAACTAGTAGAAGAGTGGAAACTTTT
CGGGCAAATTTCATTTGTAATTTCACAACTTCCCCCTGTTCCCACTTCTT
TCTTTCTCCTACCACCTGATCAATATTCGGGATCTCCCTGAGGAACCTGG
GGTGCTTTAGCTGCTATCCCCACCCGTCTTCAAGCCGGTCGCACTGTTAC
AGTACGCTCCTACAGGACCTCCCCCTTTCCCGCTTTGCCCTGCCTTGCTT
TTTCCCTACTCCCACTCGCCCTCTTCTCTTTTTTTCTTCCCTTTTCTTCC
TTCCCCCTTCCCCTCTCTCTTCTTTTTTCCATCTCCCTCCTTCTCTTTCT
CCCCCTTTCTCTTTTTTTTTACCCTCCTTCCTCCTCTTCTCTCCCCCTTT
TTCCTGTTCCTCCCTCCACCTTGTTTTTCTTTTTTCTCCTCCCCTTTCTT
TTTTCCCTCCCCCCCCTCATACTAATTCTTATCCCCCATTTACCTTTTTC
CACCGCCTTCCACTCTTTTACCTCCTTCTTTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m02.g1 MSMg01no392_m02.g1 CHROMAT_FILE:
MSMg01no392_m02.g1 PHD_FILE: MSMg01no392_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:24 2005
         (238 letters)



>mm_chr4_123837877_123838514
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggggggaagcaagcaagagaggcaaaaagcaatttgcaatttcgatgcgcaaggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agtggggggaagcaagcaagagaggcaaaaagcaatttgcaatttcgatgcgcaaggggc 379

                                                                       
Query: 61  aatttctacagacaattcttggtgcccatagccgcccaccacctccggcggctccacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatttctacagacaattcttggtgcccatagccgcccaccacctccggcggctccacctg 319

                                                                       
Query: 121 aagcccgcagagcatcatttcccattcttgtctctgagataataagtcagagagaagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagcccgcagagcatcatttcccattcttgtctctgagataataagtcagagagaagctt 259

                                                                     
Query: 181 cttatttcaaatcaaaactactttccaactagtagaagagtggaaacttttcgggcaa 238
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 catatttcaaatcaaaactactttccaactagtagaagagtggaaacttttcgggcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)