Query= MSMg01no393_a14.b1 MSMg01no393_a14.b1 CHROMAT_FILE:
MSMg01no393_a14.b1 PHD_FILE: MSMg01no393_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:47 2005
(342 letters)
>mm_chr4_125034189_125034930
Length = 742
Score = 518 bits (268), Expect = e-151
Identities = 335/384 (87%), Gaps = 42/384 (10%)
Strand = Plus / Minus
Query: 1 ctgggctgagagagagagagatgaatggtgggatgctttggtgcttggtatcagatccac 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 426 ctgggctgagagagagagagatgaatggtgggatgctttggggcttggtatcagatccac 367
Query: 61 ccatgggtaccacagtgtctgaaatccaagagaagacaaaccctgggcaggtaggagtgt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ccatgggtaccagagtgtctgaaatccaagagaagacaaaccctgggcaggtaggagtgt 307
Query: 121 caaagttcctgcactaagctgtcgggatcatcttttgaccctttcctgatgcagtcagcc 180
|||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 306 caaagttcctgccctaagctgtcgggatcatctcttggccctttcctgatgcagtcagcc 247
Query: 181 acctgcctgaacaaagcagtcctctcagccagagaaagagctaaggacacacacacacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 acctgcctgaacaaagcagtcctctcagccagagaaagagctaaggacacacacacacac 187
Query: 241 acac------------gcacacgctcacgcacac-------------------------- 262
|||| |||||||| |||||||||
Sbjct: 186 acacacacacacacacgcacacgcacacgcacacacacacacacacacacacacacgcac 127
Query: 263 ----gcgcgcacacacacacataccccatacctcacacccccatccaggcctactctgtg 318
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 126 gcacgcgcgcacacacacacataccccatacctcacacccccatccagccctactctgtg 67
Query: 319 ggttcctcccacacagctctcctg 342
||||||||||||||||||||||||
Sbjct: 66 ggttcctcccacacagctctcctg 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_a14.g1 MSMg01no393_a14.g1 CHROMAT_FILE:
MSMg01no393_a14.g1 PHD_FILE: MSMg01no393_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:48 2005
(461 letters)
>mm_chr4_124830446_124831306
Length = 861
Score = 853 bits (441), Expect = 0.0
Identities = 456/461 (98%)
Strand = Plus / Plus
Query: 1 acattttgggaaatgtttataaactgagaattctaattcctttcctcgctcatgcttctc 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 201 acattttgggaaatgtttataaactgagaattctaattcctttccttgctcacgcttctc 260
Query: 61 ctcagatggctatattgcaacggaatgatagtccctgtgaaaaatatcacttagtttttt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ctcagatggctatattgcaacggaatgatagcccctgtgaaaaatatcacttagtttttt 320
Query: 121 acagcagtggcctgactctacgaatagcagggactcactcttaaccagtccaggagtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcagtggcctgactctacgaatagcagggactcactcttaaccagtccaggagtttg 380
Query: 181 cacccgtgtagtttaaaggccctgaaggagattcagccgaggtctcctcatttgcgttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacccgtgtagtttaaaggccctgaaggagattcagccgaggtctcctcatttgcgttga 440
Query: 241 atggaagcagcgtccagatggacatcctcttccaaatcctgggatctctttggctaggcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggaagcagcgtccagatggacatcctcttccaaatcctgggatctctttggctaggcc 500
Query: 301 agttaaagagtctgggcttcatttctgactgtctgtagtcagatgcattccggttaggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 agttaaagagtctgggcttcatttctgactgtctgtagtcagatgcattccgggtaggac 560
Query: 361 ttttaggtatgaacaggagctcacactaagaacaggatagagggcagtattgagttcttc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ttttaggtatgaacaggagctcacactaagaacaggatagagggcagtattgagttctcc 620
Query: 421 cagtgaagacagaaatgaaccctttcttcattttaggctta 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgaagacagaaatgaaccctttcttcattttaggctta 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
